libomexmeta
Background to Semantic Annotations
Installation
Build from Source
Reading RDF
Serializing RDF Graphs
Singular Annotations
Composite Annotations: SBML Examples
Composite Annotations: CellML Examples
Stripping Annotations
Querying RDF
Building Diagrams
Errors and Logging
Annotating Models
Downloading Biomodels
API Reference
Developers Documentation
libomexmeta
»
Index
Index
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A
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C
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D
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E
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F
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G
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H
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I
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L
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N
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O
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P
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Q
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R
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S
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T
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W
_
__del__() (pyomexmeta.RDF method)
__eq__() (pyomexmeta.RDF method)
__init__() (pyomexmeta.Editor method)
(pyomexmeta.EnergyDiff method)
(pyomexmeta.Logger method)
(pyomexmeta.PersonalInformation method)
(pyomexmeta.PhysicalEntity method)
(pyomexmeta.PhysicalProcess method)
(pyomexmeta.PhysicalProperty method)
(pyomexmeta.RDF method)
(pyomexmeta.SingularAnnotation method)
__len__() (pyomexmeta.RDF method)
__ne__() (pyomexmeta.RDF method)
__str__() (pyomexmeta.RDF method)
__weakref__ (pyomexmeta.Editor attribute)
(pyomexmeta.EnergyDiff attribute)
(pyomexmeta.Logger attribute)
(pyomexmeta.PersonalInformation attribute)
(pyomexmeta.PhysicalEntity attribute)
(pyomexmeta.PhysicalProcess attribute)
(pyomexmeta.PhysicalProperty attribute)
(pyomexmeta.RDF attribute)
(pyomexmeta.SingularAnnotation attribute)
_PropertyBearer (class in pyomexmeta)
A
about() (pyomexmeta.EnergyDiff method)
(pyomexmeta.PhysicalEntity method)
(pyomexmeta.PhysicalProcess method)
(pyomexmeta.SingularAnnotation method)
add_account_name() (pyomexmeta.PersonalInformation method)
add_account_service_homepage() (pyomexmeta.PersonalInformation method)
add_creator() (pyomexmeta.Editor method)
(pyomexmeta.PersonalInformation method)
add_curator() (pyomexmeta.Editor method)
add_date_created() (pyomexmeta.Editor method)
add_description() (pyomexmeta.Editor method)
add_energy_diff() (pyomexmeta.Editor method)
add_foaf_blank() (pyomexmeta.PersonalInformation method)
add_foaf_literal() (pyomexmeta.PersonalInformation method)
add_foaf_uri() (pyomexmeta.PersonalInformation method)
add_from_file() (pyomexmeta.RDF method)
add_from_string() (pyomexmeta.RDF method)
add_from_uri() (pyomexmeta.RDF method)
add_mbox() (pyomexmeta.PersonalInformation method)
add_mediator() (pyomexmeta.PhysicalProcess method)
add_name() (pyomexmeta.PersonalInformation method)
add_namespace() (pyomexmeta.Editor method)
add_parent_model() (pyomexmeta.Editor method)
add_personal_information() (pyomexmeta.Editor method)
add_physical_entity() (pyomexmeta.Editor method)
add_physical_process() (pyomexmeta.Editor method)
add_physical_property() (pyomexmeta.Editor method)
add_pubmed() (pyomexmeta.Editor method)
add_singular_annotation() (pyomexmeta.Editor method)
add_sink() (pyomexmeta.EnergyDiff method)
(pyomexmeta.PhysicalProcess method)
add_source() (pyomexmeta.EnergyDiff method)
(pyomexmeta.PhysicalProcess method)
add_taxon() (pyomexmeta.Editor method)
C
check_valid_metaid() (pyomexmeta.Editor method)
clear() (pyomexmeta.Logger static method)
console_logger() (pyomexmeta.Logger static method)
critical() (pyomexmeta.Logger static method)
D
debug() (pyomexmeta.Logger static method)
delete() (pyomexmeta.Editor method)
(pyomexmeta.EnergyDiff method)
(pyomexmeta.PersonalInformation method)
(pyomexmeta.PhysicalEntity method)
(pyomexmeta.PhysicalProcess method)
(pyomexmeta.RDF method)
(pyomexmeta.SingularAnnotation method)
disable_backtrace() (pyomexmeta.Logger static method)
draw() (pyomexmeta.RDF method)
E
Editor (class in pyomexmeta)
enable_backtrace() (pyomexmeta.Logger static method)
EnergyDiff (class in pyomexmeta)
equals_rdf_vs_rdf() (pyomexmeta.RDF static method)
equals_rdf_vs_string() (pyomexmeta.RDF static method)
equals_string_vs_string() (pyomexmeta.RDF static method)
error() (pyomexmeta.Logger static method)
F
file_logger() (pyomexmeta.Logger static method)
flush() (pyomexmeta.Logger static method)
flush_on() (pyomexmeta.Logger static method)
from_file() (pyomexmeta.RDF static method)
from_string() (pyomexmeta.RDF static method)
from_uri() (pyomexmeta.RDF static method)
G
get_about() (pyomexmeta.SingularAnnotation method)
get_archive_uri() (pyomexmeta.RDF method)
get_identity() (pyomexmeta.PhysicalEntity method)
get_level() (pyomexmeta.Logger static method)
get_local_uri() (pyomexmeta.PersonalInformation method)
(pyomexmeta.RDF method)
get_locations() (pyomexmeta.PhysicalEntity method)
get_logger() (pyomexmeta.Logger static method)
get_metaid() (pyomexmeta.PersonalInformation method)
get_metaids() (pyomexmeta.Editor method)
get_model_level_annotation_uri() (pyomexmeta.RDF method)
get_model_metaid() (pyomexmeta.RDF method)
get_model_uri() (pyomexmeta.PersonalInformation method)
(pyomexmeta.RDF method)
get_num_locations() (pyomexmeta.PhysicalEntity method)
get_predicate() (pyomexmeta.SingularAnnotation method)
get_ptr() (pyomexmeta.EnergyDiff method)
(pyomexmeta.PersonalInformation method)
(pyomexmeta.PhysicalEntity method)
(pyomexmeta.PhysicalProcess method)
(pyomexmeta.SingularAnnotation method)
get_repository_uri() (pyomexmeta.RDF method)
get_resource() (pyomexmeta.SingularAnnotation method)
get_xml() (pyomexmeta.Editor method)
H
has_part() (pyomexmeta.PhysicalEntity method)
has_property() (pyomexmeta._PropertyBearer method)
(pyomexmeta.EnergyDiff method)
(pyomexmeta.PhysicalEntity method)
(pyomexmeta.PhysicalProcess method)
I
identity() (pyomexmeta.PhysicalEntity method)
info() (pyomexmeta.Logger static method)
is_part_of() (pyomexmeta.PhysicalEntity method)
is_version_of() (pyomexmeta.PhysicalProcess method)
L
Logger (class in pyomexmeta)
N
new_energy_diff() (pyomexmeta.Editor method)
new_personal_information() (pyomexmeta.Editor method)
new_physical_entity() (pyomexmeta.Editor method)
new_physical_process() (pyomexmeta.Editor method)
new_physical_property() (pyomexmeta.Editor method)
new_singular_annotation() (pyomexmeta.Editor method)
O
omexmeta::AnnotationType (C++ enum)
omexmeta::AnnotationType::energy_diff (C++ enumerator)
omexmeta::AnnotationType::PHYSICAL_ENTITY (C++ enumerator)
omexmeta::AnnotationType::PHYSICAL_PROCESS (C++ enumerator)
omexmeta::AnnotationType::SINGULAR (C++ enumerator)
omexmeta::AnnotationType::UNKNOWN (C++ enumerator)
omexmeta::Editor (C++ class)
omexmeta::Editor::addCompositeAnnotation (C++ function)
omexmeta::Editor::addContributor (C++ function)
omexmeta::Editor::addCreator (C++ function)
omexmeta::Editor::addDateCreated (C++ function)
omexmeta::Editor::addDescription (C++ function)
omexmeta::Editor::addEnergyDiff (C++ function)
omexmeta::Editor::addNamespace (C++ function)
omexmeta::Editor::addNamespaceFromAnnotation (C++ function)
omexmeta::Editor::addParentModel (C++ function)
omexmeta::Editor::addPersonalInformation (C++ function)
omexmeta::Editor::addPhysicalEntity (C++ function)
omexmeta::Editor::addPhysicalProcess (C++ function)
omexmeta::Editor::addPhysicalProperty (C++ function)
omexmeta::Editor::addPubmed (C++ function)
omexmeta::Editor::addSingleAnnotation (C++ function)
,
[1]
omexmeta::Editor::addSingleAnnotationNoValidation (C++ function)
omexmeta::Editor::addTaxon (C++ function)
omexmeta::Editor::addTriples (C++ function)
omexmeta::Editor::checkValidMetaid (C++ function)
omexmeta::Editor::create_ids_ (C++ member)
omexmeta::Editor::createNodeWithModelUri (C++ function)
omexmeta::Editor::Editor (C++ function)
omexmeta::Editor::extractNamespacesFromTriplesVector (C++ function)
omexmeta::Editor::generate_new_metaids_ (C++ member)
omexmeta::Editor::getArchiveUri (C++ function)
omexmeta::Editor::getLocalUri (C++ function)
omexmeta::Editor::getMetaidBase (C++ function)
omexmeta::Editor::getMetaids (C++ function)
omexmeta::Editor::getModel (C++ function)
omexmeta::Editor::getModelLevelAnnotationUri (C++ function)
omexmeta::Editor::getModelUri (C++ function)
omexmeta::Editor::getNamespaces (C++ function)
omexmeta::Editor::getRepositoryUri (C++ function)
omexmeta::Editor::getType (C++ function)
omexmeta::Editor::getUriHandler (C++ function)
omexmeta::Editor::getXml (C++ function)
omexmeta::Editor::metaid_base_ (C++ member)
omexmeta::Editor::metaids_ (C++ member)
omexmeta::Editor::model_ (C++ member)
omexmeta::Editor::namespaces_ (C++ member)
omexmeta::Editor::newEnergyDiff (C++ function)
omexmeta::Editor::newPersonalInformation (C++ function)
omexmeta::Editor::newPhysicalEntity (C++ function)
omexmeta::Editor::newPhysicalProcess (C++ function)
omexmeta::Editor::newPhysicalProperty (C++ function)
omexmeta::Editor::newPhysicalPropertyPtr (C++ function)
omexmeta::Editor::newSingularAnnotation (C++ function)
,
[1]
omexmeta::Editor::omexMetaXmlPtr_ (C++ member)
omexmeta::Editor::removeEnergyDiff (C++ function)
omexmeta::Editor::removePersonalInformation (C++ function)
omexmeta::Editor::removePhysicalEntity (C++ function)
omexmeta::Editor::removePhysicalProcess (C++ function)
omexmeta::Editor::removePropertyBearer (C++ function)
omexmeta::Editor::removeSingleAnnotation (C++ function)
omexmeta::Editor::sbml_semantic_extraction_ (C++ member)
omexmeta::Editor::setMetaidBase (C++ function)
omexmeta::Editor::setNamespaces (C++ function)
omexmeta::Editor::setType (C++ function)
omexmeta::Editor::size (C++ function)
omexmeta::Editor::stripAnnotations (C++ function)
omexmeta::Editor::type_ (C++ member)
omexmeta::Editor::uriHandler_ (C++ member)
omexmeta::Editor::xml_ (C++ member)
omexmeta::Editor::~Editor (C++ function)
omexmeta::ElementExtractor (C++ class)
omexmeta::ElementExtractor::collectElements (C++ function)
omexmeta::ElementExtractor::doc_ (C++ member)
omexmeta::ElementExtractor::element_ (C++ member)
omexmeta::ElementExtractor::ElementExtractor (C++ function)
omexmeta::ElementExtractor::elements_ (C++ member)
omexmeta::ElementExtractor::getElements (C++ function)
omexmeta::ElementExtractor::markup_ (C++ member)
omexmeta::ElementExtractor::~ElementExtractor (C++ function)
omexmeta::EnergyDiff (C++ class)
omexmeta::EnergyDiff::about (C++ function)
,
[1]
omexmeta::EnergyDiff::addSink (C++ function)
omexmeta::EnergyDiff::addSource (C++ function)
omexmeta::EnergyDiff::createMetaId (C++ function)
omexmeta::EnergyDiff::EnergyDiff (C++ function)
,
[1]
,
[2]
omexmeta::EnergyDiff::free (C++ function)
omexmeta::EnergyDiff::getNumSinks (C++ function)
omexmeta::EnergyDiff::getNumSources (C++ function)
omexmeta::EnergyDiff::getPropertyMetaidBase (C++ function)
omexmeta::EnergyDiff::getSinks (C++ function)
omexmeta::EnergyDiff::getSources (C++ function)
omexmeta::EnergyDiff::hasProperty (C++ function)
,
[1]
,
[2]
,
[3]
omexmeta::EnergyDiff::isPropertyOf (C++ function)
omexmeta::EnergyDiff::isVersionOf (C++ function)
omexmeta::EnergyDiff::operator!= (C++ function)
omexmeta::EnergyDiff::operator== (C++ function)
omexmeta::EnergyDiff::property_metaid_base_ (C++ member)
omexmeta::EnergyDiff::propertyIsVersionOf (C++ function)
omexmeta::EnergyDiff::sinks_ (C++ member)
omexmeta::EnergyDiff::sources_ (C++ member)
omexmeta::EnergyDiff::toTriples (C++ function)
omexmeta::EnergyDiff::~EnergyDiff (C++ function)
omexmeta::MarkupIdentifier (C++ class)
omexmeta::MarkupIdentifier::collectElementNames (C++ function)
omexmeta::MarkupIdentifier::doc_ (C++ member)
omexmeta::MarkupIdentifier::element_names_ (C++ member)
omexmeta::MarkupIdentifier::getElementNames (C++ function)
omexmeta::MarkupIdentifier::isCellML (C++ function)
omexmeta::MarkupIdentifier::isSBML (C++ function)
omexmeta::MarkupIdentifier::markup_ (C++ member)
omexmeta::MarkupIdentifier::MarkupIdentifier (C++ function)
omexmeta::MarkupIdentifier::parseML (C++ function)
omexmeta::MarkupIdentifier::~MarkupIdentifier (C++ function)
omexmeta::MetaID (C++ class)
omexmeta::MetaID::base_ (C++ member)
omexmeta::MetaID::countDigits (C++ function)
omexmeta::MetaID::generate (C++ function)
,
[1]
omexmeta::MetaID::maxNumber (C++ function)
omexmeta::MetaID::MetaID (C++ function)
omexmeta::MetaID::num_digits_ (C++ member)
omexmeta::MetaID::operator!= (C++ function)
omexmeta::MetaID::operator== (C++ function)
omexmeta::MetaID::start_number_ (C++ member)
omexmeta::OmexMetaUtils (C++ class)
omexmeta::OmexMetaUtils::assertMatchByNewLine (C++ function)
omexmeta::OmexMetaUtils::assertRegexMatchSplitByNewLine (C++ function)
omexmeta::OmexMetaUtils::concatMetaIdAndUri (C++ function)
omexmeta::OmexMetaUtils::configurePrefixStrings (C++ function)
omexmeta::OmexMetaUtils::download (C++ function)
omexmeta::OmexMetaUtils::endsWith (C++ function)
omexmeta::OmexMetaUtils::exists (C++ function)
omexmeta::OmexMetaUtils::generateUniqueMetaid (C++ function)
omexmeta::OmexMetaUtils::getAllChildElements (C++ function)
omexmeta::OmexMetaUtils::getChildElementCalled (C++ function)
omexmeta::OmexMetaUtils::getNamespaceFromUri (C++ function)
omexmeta::OmexMetaUtils::getXmlNodeProperty (C++ function)
omexmeta::OmexMetaUtils::isFormattedUri (C++ function)
omexmeta::OmexMetaUtils::isStringEmpty (C++ function)
omexmeta::OmexMetaUtils::isSubString (C++ function)
omexmeta::OmexMetaUtils::OmexMetaUtils (C++ function)
omexmeta::OmexMetaUtils::parseXmlDocument (C++ function)
omexmeta::OmexMetaUtils::prepareBaseUri (C++ function)
omexmeta::OmexMetaUtils::readFromFile (C++ function)
omexmeta::OmexMetaUtils::removeFile (C++ function)
omexmeta::OmexMetaUtils::removeIfExists (C++ function)
omexmeta::OmexMetaUtils::splitStringBy (C++ function)
omexmeta::OmexMetaUtils::startsWith (C++ function)
omexmeta::OmexMetaUtils::stringInVector (C++ function)
omexmeta::OmexMetaUtils::stringReplace (C++ function)
omexmeta::PhysicalEntity (C++ class)
omexmeta::PhysicalEntity::about (C++ function)
,
[1]
omexmeta::PhysicalEntity::free (C++ function)
omexmeta::PhysicalEntity::getIdentityResource (C++ function)
omexmeta::PhysicalEntity::getLocationResources (C++ function)
omexmeta::PhysicalEntity::getNumLocations (C++ function)
omexmeta::PhysicalEntity::hasPart (C++ function)
omexmeta::PhysicalEntity::hasProperty (C++ function)
,
[1]
,
[2]
omexmeta::PhysicalEntity::identity (C++ function)
omexmeta::PhysicalEntity::identity_resource_ (C++ member)
omexmeta::PhysicalEntity::is (C++ function)
omexmeta::PhysicalEntity::isPartOf (C++ function)
omexmeta::PhysicalEntity::isPropertyOf (C++ function)
omexmeta::PhysicalEntity::location_resources_ (C++ member)
omexmeta::PhysicalEntity::operator!= (C++ function)
omexmeta::PhysicalEntity::operator== (C++ function)
omexmeta::PhysicalEntity::part_resources_ (C++ member)
omexmeta::PhysicalEntity::physical_entity_property_id_ (C++ member)
omexmeta::PhysicalEntity::PhysicalEntity (C++ function)
,
[1]
,
[2]
,
[3]
omexmeta::PhysicalEntity::property_metaid_base_ (C++ member)
omexmeta::PhysicalEntity::propertyIsVersionOf (C++ function)
omexmeta::PhysicalEntity::setIdentity (C++ function)
omexmeta::PhysicalEntity::toTriples (C++ function)
omexmeta::PhysicalEntity::~PhysicalEntity (C++ function)
omexmeta::PhysicalProcess (C++ class)
omexmeta::PhysicalProcess::about (C++ function)
,
[1]
omexmeta::PhysicalProcess::addMediator (C++ function)
omexmeta::PhysicalProcess::addSink (C++ function)
omexmeta::PhysicalProcess::addSource (C++ function)
omexmeta::PhysicalProcess::free (C++ function)
omexmeta::PhysicalProcess::getMediators (C++ function)
omexmeta::PhysicalProcess::getNumMediators (C++ function)
omexmeta::PhysicalProcess::getNumSinks (C++ function)
omexmeta::PhysicalProcess::getNumSources (C++ function)
omexmeta::PhysicalProcess::getPropertyMetaidBase (C++ function)
omexmeta::PhysicalProcess::getSinks (C++ function)
omexmeta::PhysicalProcess::getSources (C++ function)
omexmeta::PhysicalProcess::hasProperty (C++ function)
,
[1]
,
[2]
,
[3]
omexmeta::PhysicalProcess::is_version_of_ (C++ member)
omexmeta::PhysicalProcess::isVersionOf (C++ function)
omexmeta::PhysicalProcess::mediators_ (C++ member)
omexmeta::PhysicalProcess::operator!= (C++ function)
omexmeta::PhysicalProcess::operator== (C++ function)
omexmeta::PhysicalProcess::PhysicalProcess (C++ function)
,
[1]
,
[2]
omexmeta::PhysicalProcess::property_metaid_base_ (C++ member)
omexmeta::PhysicalProcess::sinks_ (C++ member)
omexmeta::PhysicalProcess::sources_ (C++ member)
omexmeta::PhysicalProcess::toTriples (C++ function)
omexmeta::PhysicalProcess::~PhysicalProcess (C++ function)
omexmeta::PhysicalProperty (C++ class)
omexmeta::PhysicalProperty::about (C++ function)
omexmeta::PhysicalProperty::about_value_ (C++ member)
omexmeta::PhysicalProperty::getAbout (C++ function)
omexmeta::PhysicalProperty::getIsPropertyOfValue (C++ function)
omexmeta::PhysicalProperty::getIsVersionOfValue (C++ function)
omexmeta::PhysicalProperty::getLocalUri (C++ function)
omexmeta::PhysicalProperty::getModelUri (C++ function)
omexmeta::PhysicalProperty::getPropertyBearerBase (C++ function)
omexmeta::PhysicalProperty::getPropertyMetaidBase (C++ function)
omexmeta::PhysicalProperty::is_property_of_value_ (C++ member)
omexmeta::PhysicalProperty::is_set_ (C++ member)
omexmeta::PhysicalProperty::is_version_of_value_ (C++ member)
omexmeta::PhysicalProperty::isPropertyOf (C++ function)
omexmeta::PhysicalProperty::isSet (C++ function)
omexmeta::PhysicalProperty::isVersionOf (C++ function)
omexmeta::PhysicalProperty::model_ (C++ member)
omexmeta::PhysicalProperty::new_metaid_exclusion_list_ (C++ member)
omexmeta::PhysicalProperty::operator!= (C++ function)
omexmeta::PhysicalProperty::operator= (C++ function)
,
[1]
omexmeta::PhysicalProperty::operator== (C++ function)
omexmeta::PhysicalProperty::PhysicalProperty (C++ function)
,
[1]
,
[2]
omexmeta::PhysicalProperty::property_bearer_base_ (C++ member)
omexmeta::PhysicalProperty::property_metaid_base_ (C++ member)
omexmeta::PhysicalProperty::setIsSet (C++ function)
omexmeta::PhysicalProperty::setPropertyBearerBase (C++ function)
omexmeta::PhysicalProperty::setPropertyMetaidBase (C++ function)
omexmeta::PhysicalProperty::toTriples (C++ function)
omexmeta::PhysicalProperty::uriHandler_ (C++ member)
omexmeta::PhysicalProperty::~PhysicalProperty (C++ function)
omexmeta::Predicate (C++ class)
omexmeta::Predicate::addSeenNamespaceToSerializer (C++ function)
omexmeta::Predicate::freeNode (C++ function)
omexmeta::Predicate::getNamespace (C++ function)
omexmeta::Predicate::getNode (C++ function)
omexmeta::Predicate::getPrefix (C++ function)
omexmeta::Predicate::getTerm (C++ function)
omexmeta::Predicate::getUri (C++ function)
omexmeta::Predicate::getValidTerms (C++ function)
omexmeta::Predicate::namespace_ (C++ member)
omexmeta::Predicate::namespaceKnown (C++ function)
omexmeta::Predicate::namespaceMap (C++ function)
omexmeta::Predicate::node_ (C++ member)
omexmeta::Predicate::operator!= (C++ function)
omexmeta::Predicate::operator== (C++ function)
omexmeta::Predicate::Predicate (C++ function)
,
[1]
,
[2]
omexmeta::Predicate::prefix_ (C++ member)
omexmeta::Predicate::setNode (C++ function)
omexmeta::Predicate::str (C++ function)
omexmeta::Predicate::term_ (C++ member)
omexmeta::Predicate::uri_ (C++ member)
omexmeta::Predicate::valid_terms_ (C++ member)
omexmeta::Predicate::verify (C++ function)
omexmeta::PropertyBearer (C++ class)
omexmeta::PropertyBearer::about (C++ function)
,
[1]
omexmeta::PropertyBearer::about_uri_type_ (C++ member)
omexmeta::PropertyBearer::about_value_ (C++ member)
omexmeta::PropertyBearer::generateMetaId (C++ function)
omexmeta::PropertyBearer::getAbout (C++ function)
omexmeta::PropertyBearer::getAboutUriType (C++ function)
omexmeta::PropertyBearer::getLocalUri (C++ function)
omexmeta::PropertyBearer::getModel (C++ function)
omexmeta::PropertyBearer::getModelUri (C++ function)
omexmeta::PropertyBearer::getNewMetaidExclusionList (C++ function)
omexmeta::PropertyBearer::getPhysicalProperty (C++ function)
omexmeta::PropertyBearer::getPropertyAbout (C++ function)
omexmeta::PropertyBearer::getPropertyMetaidBase (C++ function)
omexmeta::PropertyBearer::getType (C++ function)
omexmeta::PropertyBearer::hasProperty (C++ function)
,
[1]
,
[2]
omexmeta::PropertyBearer::model_ (C++ member)
omexmeta::PropertyBearer::new_metaid_exclusion_list_ (C++ member)
omexmeta::PropertyBearer::operator!= (C++ function)
omexmeta::PropertyBearer::operator= (C++ function)
,
[1]
omexmeta::PropertyBearer::operator== (C++ function)
omexmeta::PropertyBearer::physical_property_ (C++ member)
omexmeta::PropertyBearer::property_metaid_base_ (C++ member)
omexmeta::PropertyBearer::PropertyBearer (C++ function)
,
[1]
,
[2]
,
[3]
,
[4]
omexmeta::PropertyBearer::setAboutUriType (C++ function)
omexmeta::PropertyBearer::toTriples (C++ function)
omexmeta::PropertyBearer::type_ (C++ member)
omexmeta::PropertyBearer::uriHandler_ (C++ member)
omexmeta::PropertyBearer::~PropertyBearer (C++ function)
omexmeta::Query (C++ class)
omexmeta::Query::asMap (C++ function)
omexmeta::Query::asString (C++ function)
omexmeta::Query::model_ (C++ member)
omexmeta::Query::Query (C++ function)
omexmeta::Query::query_ (C++ member)
omexmeta::Query::results_ (C++ member)
omexmeta::RDF (C++ class)
omexmeta::RDF::addFromFile (C++ function)
omexmeta::RDF::addFromString (C++ function)
omexmeta::RDF::addFromUri (C++ function)
omexmeta::RDF::addTriple (C++ function)
omexmeta::RDF::addTriples (C++ function)
omexmeta::RDF::classifyXmlType (C++ function)
omexmeta::RDF::classifyXmlTypeFromFile (C++ function)
omexmeta::RDF::commitTransaction (C++ function)
omexmeta::RDF::empty (C++ function)
omexmeta::RDF::equals (C++ function)
,
[1]
,
[2]
,
[3]
,
[4]
omexmeta::RDF::extractSemanticInformationFromSBML (C++ function)
omexmeta::RDF::freeRDF (C++ function)
omexmeta::RDF::fromFile (C++ function)
omexmeta::RDF::fromString (C++ function)
omexmeta::RDF::fromUri (C++ function)
omexmeta::RDF::getArchiveUri (C++ function)
omexmeta::RDF::getLocalUri (C++ function)
omexmeta::RDF::getModel (C++ function)
omexmeta::RDF::getModelLevelAnnotationUri (C++ function)
omexmeta::RDF::getModelMetaid (C++ function)
omexmeta::RDF::getModelUri (C++ function)
omexmeta::RDF::getRepositoryUri (C++ function)
omexmeta::RDF::getStorage (C++ function)
omexmeta::RDF::getTransactionHandle (C++ function)
omexmeta::RDF::getTransactionRollback (C++ function)
omexmeta::RDF::getUriHandler (C++ function)
omexmeta::RDF::getXmlType (C++ function)
omexmeta::RDF::listOptions (C++ function)
omexmeta::RDF::model_ (C++ member)
omexmeta::RDF::namespaces_ (C++ member)
omexmeta::RDF::OMEXlib_ (C++ member)
omexmeta::RDF::operator!= (C++ function)
omexmeta::RDF::operator= (C++ function)
,
[1]
omexmeta::RDF::operator== (C++ function)
omexmeta::RDF::propagateNamespacesFromParser (C++ function)
omexmeta::RDF::purgeRDFBag (C++ function)
omexmeta::RDF::queryResultsAsMap (C++ function)
omexmeta::RDF::queryResultsAsString (C++ function)
omexmeta::RDF::RDF (C++ function)
,
[1]
,
[2]
omexmeta::RDF::seen_namespaces_ (C++ member)
omexmeta::RDF::setArchiveUri (C++ function)
omexmeta::RDF::setLogHandlers (C++ function)
omexmeta::RDF::setModelMetaid (C++ function)
omexmeta::RDF::setModelUri (C++ function)
omexmeta::RDF::setRepositoryUri (C++ function)
omexmeta::RDF::setXmlType (C++ function)
omexmeta::RDF::size (C++ function)
omexmeta::RDF::startTransaction (C++ function)
omexmeta::RDF::startTransactionWithHandle (C++ function)
omexmeta::RDF::storage_ (C++ member)
omexmeta::RDF::toEditor (C++ function)
omexmeta::RDF::toEditorPtr (C++ function)
omexmeta::RDF::toFile (C++ function)
omexmeta::RDF::toString (C++ function)
omexmeta::RDF::translateVcard (C++ function)
omexmeta::RDF::uriHandler_ (C++ member)
omexmeta::RDF::xmlType (C++ member)
omexmeta::RDF::~RDF (C++ function)
omexmeta::SBMLSemanticExtraction (C++ class)
omexmeta::SBMLSemanticExtraction::editor_ (C++ member)
omexmeta::SBMLSemanticExtraction::extractProcessesFromReactions (C++ function)
omexmeta::SBMLSemanticExtraction::extractSpeciesCompartmentSemantics (C++ function)
omexmeta::SBMLSemanticExtraction::sbml_string_ (C++ member)
omexmeta::SBMLSemanticExtraction::SBMLSemanticExtraction (C++ function)
omexmeta::Triple (C++ class)
omexmeta::Triple::about (C++ function)
,
[1]
,
[2]
omexmeta::Triple::freeTriple (C++ function)
omexmeta::Triple::getAbout (C++ function)
omexmeta::Triple::getLocalUri (C++ function)
omexmeta::Triple::getModelUri (C++ function)
omexmeta::Triple::getStatement (C++ function)
omexmeta::Triple::isEmpty (C++ function)
omexmeta::Triple::operator= (C++ function)
,
[1]
omexmeta::Triple::predicate (C++ function)
,
[1]
omexmeta::Triple::resourceBlank (C++ function)
omexmeta::Triple::resourceLiteral (C++ function)
omexmeta::Triple::resourceUri (C++ function)
omexmeta::Triple::resourceWithModelUri (C++ function)
omexmeta::Triple::setModelUri (C++ function)
omexmeta::Triple::setPredicate (C++ function)
omexmeta::Triple::setResourceBlank (C++ function)
omexmeta::Triple::setResourceLiteral (C++ function)
omexmeta::Triple::setResourceUri (C++ function)
omexmeta::Triple::setResourceWithModelUri (C++ function)
omexmeta::Triple::Triple (C++ function)
,
[1]
,
[2]
,
[3]
,
[4]
omexmeta::Triple::uriHandler_ (C++ member)
omexmeta::Triple::~Triple (C++ function)
omexmeta::Triples (C++ class)
omexmeta::Triples::begin (C++ function)
omexmeta::Triples::capacity (C++ function)
omexmeta::Triples::emplace_back (C++ function)
,
[1]
,
[2]
omexmeta::Triples::end (C++ function)
omexmeta::Triples::freeTriples (C++ function)
omexmeta::Triples::getPredicates (C++ function)
omexmeta::Triples::getResources (C++ function)
omexmeta::Triples::getSubjectsStr (C++ function)
omexmeta::Triples::isEmpty (C++ function)
omexmeta::Triples::moveBack (C++ function)
omexmeta::Triples::operator!= (C++ function)
omexmeta::Triples::operator== (C++ function)
omexmeta::Triples::operator[] (C++ function)
,
[1]
omexmeta::Triples::pop (C++ function)
omexmeta::Triples::size (C++ function)
omexmeta::Triples::Triples (C++ function)
,
[1]
,
[2]
,
[3]
omexmeta::Triples::triples_ (C++ member)
P
PersonalInformation (class in pyomexmeta)
PhysicalEntity (class in pyomexmeta)
PhysicalProcess (class in pyomexmeta)
PhysicalProperty (class in pyomexmeta)
predicate() (pyomexmeta.SingularAnnotation method)
predicate_from_uri() (pyomexmeta.SingularAnnotation method)
Q
query_results_as_dict() (pyomexmeta.RDF method)
query_results_as_string() (pyomexmeta.RDF method)
R
RDF (class in pyomexmeta)
remove_energy_diff() (pyomexmeta.Editor method)
remove_personal_information() (pyomexmeta.Editor method)
remove_physical_entity() (pyomexmeta.Editor method)
remove_physical_process() (pyomexmeta.Editor method)
remove_single_annotation() (pyomexmeta.Editor method)
resource_blank() (pyomexmeta.SingularAnnotation method)
resource_literal() (pyomexmeta.SingularAnnotation method)
resource_uri() (pyomexmeta.SingularAnnotation method)
S
set_archive_uri() (pyomexmeta.RDF method)
set_formatter() (pyomexmeta.Logger static method)
set_level() (pyomexmeta.Logger static method)
set_metaid() (pyomexmeta.PersonalInformation method)
set_model_metaid() (pyomexmeta.RDF method)
set_model_uri() (pyomexmeta.RDF method)
set_predicate_from_uri() (pyomexmeta.SingularAnnotation method)
set_repository_uri() (pyomexmeta.RDF method)
set_resource_blank() (pyomexmeta.SingularAnnotation method)
set_resource_literal() (pyomexmeta.SingularAnnotation method)
set_resource_uri() (pyomexmeta.SingularAnnotation method)
SingularAnnotation (class in pyomexmeta)
size() (pyomexmeta.Logger static method)
T
to_editor() (pyomexmeta.RDF method)
to_file() (pyomexmeta.RDF method)
to_string() (pyomexmeta.RDF method)
trace() (pyomexmeta.Logger static method)
W
warn() (pyomexmeta.Logger static method)