Querying RDF
Use sparql.
Results as a map/dict
Demonstrate creating a sparql query in Python
import os
from pyomexmeta import RDF, eUriType
# get the link to teusink2000
teusink_biomod_link = r"https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml"
# download model xml, scan for rdf, create rdf graph and store in sqlite database
rdf = RDF.from_uri(teusink_biomod_link, syntax="rdfxml",
storage_type="sqlite", storage_name="TeusinkAnnotations2000",
storage_options="new='yes'")
# do a search for all annotations with glucode as resource: CHEBI:17234
query_string = """
SELECT ?x ?y
WHERE {
?x ?y <http://identifiers.org/obo.chebi/CHEBI:17234>
}
"""
query_results = rdf.query_results_as_dict(query_string)
print(type(query_results))
for k, v in query_results.items():
print(k, v)
Output
<class 'dict'>
x ['https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004', 'https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022']
y ['http://biomodels.net/biology-qualifiers/is', 'http://biomodels.net/biology-qualifiers/is']
Demonstrate creating a sparql query in C++
#include "omexmeta/OmexMeta.h"
#include "vector"
using namespace omexmeta;
int main() {
//get the link to teusink2000
std::string teusink_biomod_link = "https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml";
// download model xml, scan for rdf, create rdf graph and store in sqlite database
RDF rdf = RDF::fromUri(teusink_biomod_link, "rdfxml");
std::string query_string = "SELECT ?x ?y\n"
"WHERE {\n"
" ?x ?y <http://identifiers.org/obo.chebi/CHEBI:17234>\n"
"}";
// typedef'd std::unordered_map<std::string, std::vector<std::string>>
ResultsMap resultsMap = rdf.queryResultsAsMap(query_string);
}
Output
Demonstrate creating a sparql query in C
#include "omexmeta/OmexMeta.h"
#include "omexmeta/OmexMetaCApi.h"
using namespace omexmeta;
int main() {
//get the link to teusink2000
const char* teusink_biomod_link = "https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml";
// download model xml, scan for rdf, create rdf graph and store in sqlite database
RDF* rdf = RDF_fromUri(teusink_biomod_link, "rdfxml");
const char* query_string = "SELECT ?x ?y\n"
"WHERE {\n"
" ?x ?y <http://identifiers.org/obo.chebi/CHEBI:17234>\n"
"}";
// typedef'd std::unordered_map<std::string, std::vector<std::string>>
ResultsMap* resultsMap = RDF_queryResultsAsMap(rdf, query_string);
RDF_delete(rdf);
}
Output
Results as a String
Demonstrate creating a sparql query in Python
import os
from pyomexmeta import RDF, eUriType
# get the link to teusink2000
teusink_biomod_link = r"https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml"
# download model xml, scan for rdf, create rdf graph and store in sqlite database
rdf = RDF.from_uri(teusink_biomod_link, syntax="rdfxml",
storage_type="sqlite", storage_name="TeusinkAnnotations2000",
storage_options="new='yes'")
# do a search for all annotations with glucode as resource: CHEBI:17234
query_string = """
SELECT ?x ?y
WHERE {
?x ?y <http://identifiers.org/obo.chebi/CHEBI:17234>
}
"""
results_formats = [
"xml",
"json",
"table",
"csv",
"mkr",
"tsv",
"html",
"turtle",
"rdfxml",
]
for i in results_formats:
print("Sparql results format: {}".format(i))
print(rdf.query_results_as_string(query_string, results_syntax=i))
print("\n\n")
Output
Sparql results format: xml
<?xml version="1.0" encoding="utf-8"?>
<sparql xmlns="http://www.w3.org/2005/sparql-results#">
<head>
<variable name="x"/>
<variable name="y"/>
</head>
<results>
<result>
<binding name="x"><uri>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004</uri></binding>
<binding name="y"><uri>http://biomodels.net/biology-qualifiers/is</uri></binding>
</result>
<result>
<binding name="x"><uri>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022</uri></binding>
<binding name="y"><uri>http://biomodels.net/biology-qualifiers/is</uri></binding>
</result>
</results>
</sparql>
Sparql results format: json
{
"head": {
"vars": [ "x", "y" ]
},
"results": {
"ordered" : false,
"distinct" : false,
"bindings" : [
{
"x" : { "type": "uri", "value": "https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004" },
"y" : { "type": "uri", "value": "http://biomodels.net/biology-qualifiers/is" }
},
{
"x" : { "type": "uri", "value": "https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022" },
"y" : { "type": "uri", "value": "http://biomodels.net/biology-qualifiers/is" }
}
]
}
}
Sparql results format: table
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|
===========================================================================================================================================================================
| uri<https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004> | uri<http://biomodels.net/biology-qualifiers/is> |
| uri<https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022> | uri<http://biomodels.net/biology-qualifiers/is> |
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Sparql results format: csv
x,y
https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004,http://biomodels.net/biology-qualifiers/is
https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022,http://biomodels.net/biology-qualifiers/is
Sparql results format: mkr
result is relation with format = csv;
begin relation result;
x,y;
https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004,http://biomodels.net/biology-qualifiers/is;
https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022,http://biomodels.net/biology-qualifiers/is;
end relation result;
Sparql results format: tsv
?x ?y
<https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004> <http://biomodels.net/biology-qualifiers/is>
<https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022> <http://biomodels.net/biology-qualifiers/is>
Sparql results format: html
<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN"
"http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title>SPARQL Query Results</title>
</head>
<body>
<table id="results" border="1">
<tr>
<th>?x</th>
<th>?y</th>
</tr>
<tr class="result">
<td><span class="uri"><a href="https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004">https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004</a></span></td>
<td><span class="uri"><a href="http://biomodels.net/biology-qualifiers/is">http://biomodels.net/biology-qualifiers/is</a></span></td>
</tr>
<tr class="result">
<td><span class="uri"><a href="https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022">https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022</a></span></td>
<td><span class="uri"><a href="http://biomodels.net/biology-qualifiers/is">http://biomodels.net/biology-qualifiers/is</a></span></td>
</tr>
</table>
<p>Total number of rows: <span class="count">2</span>.</p>
</body>
</html>
Sparql results format: turtle
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rs: <http://www.w3.org/2001/sw/DataAccess/tests/result-set#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
[] rdf:type rs:ResultSet ;
rs:resultVariable "x" ;
rs:resultVariable "y" ;
rs:solution [ rs:binding [ rs:variable "x" ;
rs:value <https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004>
] ;
rs:binding [ rs:variable "y" ;
rs:value <http://biomodels.net/biology-qualifiers/is>
]
] ;
rs:solution [ rs:binding [ rs:variable "x" ;
rs:value <https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022>
] ;
rs:binding [ rs:variable "y" ;
rs:value <http://biomodels.net/biology-qualifiers/is>
]
] .
Sparql results format: rdfxml
<?xml version="1.0" encoding="utf-8"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:rs="http://www.w3.org/2001/sw/DataAccess/tests/result-set#">
<rs:ResultSet>
<rs:resultVariable>x</rs:resultVariable>
<rs:resultVariable>y</rs:resultVariable>
<rs:solution>
<rdf:Description>
<rs:binding>
<rdf:Description>
<rs:value rdf:resource="https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004"/>
<rs:variable>x</rs:variable>
</rdf:Description>
</rs:binding>
<rs:binding>
<rdf:Description>
<rs:value rdf:resource="http://biomodels.net/biology-qualifiers/is"/>
<rs:variable>y</rs:variable>
</rdf:Description>
</rs:binding>
</rdf:Description>
</rs:solution>
<rs:solution>
<rdf:Description>
<rs:binding>
<rdf:Description>
<rs:value rdf:resource="https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022"/>
<rs:variable>x</rs:variable>
</rdf:Description>
</rs:binding>
<rs:binding>
<rdf:Description>
<rs:value rdf:resource="http://biomodels.net/biology-qualifiers/is"/>
<rs:variable>y</rs:variable>
</rdf:Description>
</rs:binding>
</rdf:Description>
</rs:solution>
</rs:ResultSet>
</rdf:RDF>
Demonstrate creating a sparql query in C++
#include "omexmeta/OmexMeta.h"
#include "vector"
using namespace omexmeta;
int main() {
//get the link to teusink2000
std::string teusink_biomod_link = "https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml";
// download model xml, scan for rdf, create rdf graph and store in sqlite database
RDF rdf = RDF::fromUri(teusink_biomod_link, "rdfxml");
std::string query_string = "SELECT ?x ?y\n"
"WHERE {\n"
" ?x ?y <http://identifiers.org/obo.chebi/CHEBI:17234>\n"
"}";
std::vector<std::string> results_formats = {
"xml",
"json",
"table",
"csv",
"mkr",
"tsv",
"html",
"turtle",
"rdfxml",
};
for (auto &f : results_formats){
std::cout << "Sparql results format: " << f << std::endl;
std::cout << rdf.queryResultsAsString(query_string, f) << std::endl;
std::cout << std::endl;
std::cout << std::endl;
}
}
Output
Sparql results format: xml
<?xml version="1.0" encoding="utf-8"?>
<sparql xmlns="http://www.w3.org/2005/sparql-results#">
<head>
<variable name="x"/>
<variable name="y"/>
</head>
<results>
<result>
<binding name="x"><uri>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004</uri></binding>
<binding name="y"><uri>http://biomodels.net/biology-qualifiers/is</uri></binding>
</result>
<result>
<binding name="x"><uri>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022</uri></binding>
<binding name="y"><uri>http://biomodels.net/biology-qualifiers/is</uri></binding>
</result>
</results>
</sparql>
Sparql results format: json
{
"head": {
"vars": [ "x", "y" ]
},
"results": {
"ordered" : false,
"distinct" : false,
"bindings" : [
{
"x" : { "type": "uri", "value": "https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004" },
"y" : { "type": "uri", "value": "http://biomodels.net/biology-qualifiers/is" }
},
{
"x" : { "type": "uri", "value": "https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022" },
"y" : { "type": "uri", "value": "http://biomodels.net/biology-qualifiers/is" }
}
]
}
}
Sparql results format: table
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|
===========================================================================================================================================================================
| uri<https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004> | uri<http://biomodels.net/biology-qualifiers/is> |
| uri<https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022> | uri<http://biomodels.net/biology-qualifiers/is> |
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Sparql results format: csv
x,y
https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004,http://biomodels.net/biology-qualifiers/is
https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022,http://biomodels.net/biology-qualifiers/is
Sparql results format: mkr
result is relation with format = csv;
begin relation result;
x,y;
https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004,http://biomodels.net/biology-qualifiers/is;
https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022,http://biomodels.net/biology-qualifiers/is;
end relation result;
Sparql results format: tsv
?x ?y
<https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004> <http://biomodels.net/biology-qualifiers/is>
<https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022> <http://biomodels.net/biology-qualifiers/is>
Sparql results format: html
<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN"
"http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title>SPARQL Query Results</title>
</head>
<body>
<table id="results" border="1">
<tr>
<th>?x</th>
<th>?y</th>
</tr>
<tr class="result">
<td><span class="uri"><a href="https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004">https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004</a></span></td>
<td><span class="uri"><a href="http://biomodels.net/biology-qualifiers/is">http://biomodels.net/biology-qualifiers/is</a></span></td>
</tr>
<tr class="result">
<td><span class="uri"><a href="https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022">https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022</a></span></td>
<td><span class="uri"><a href="http://biomodels.net/biology-qualifiers/is">http://biomodels.net/biology-qualifiers/is</a></span></td>
</tr>
</table>
<p>Total number of rows: <span class="count">2</span>.</p>
</body>
</html>
Sparql results format: turtle
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rs: <http://www.w3.org/2001/sw/DataAccess/tests/result-set#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
[] rdf:type rs:ResultSet ;
rs:resultVariable "x" ;
rs:resultVariable "y" ;
rs:solution [ rs:binding [ rs:variable "x" ;
rs:value <https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004>
] ;
rs:binding [ rs:variable "y" ;
rs:value <http://biomodels.net/biology-qualifiers/is>
]
] ;
rs:solution [ rs:binding [ rs:variable "x" ;
rs:value <https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022>
] ;
rs:binding [ rs:variable "y" ;
rs:value <http://biomodels.net/biology-qualifiers/is>
]
] .
Sparql results format: rdfxml
<?xml version="1.0" encoding="utf-8"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:rs="http://www.w3.org/2001/sw/DataAccess/tests/result-set#">
<rs:ResultSet>
<rs:resultVariable>x</rs:resultVariable>
<rs:resultVariable>y</rs:resultVariable>
<rs:solution>
<rdf:Description>
<rs:binding>
<rdf:Description>
<rs:value rdf:resource="https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004"/>
<rs:variable>x</rs:variable>
</rdf:Description>
</rs:binding>
<rs:binding>
<rdf:Description>
<rs:value rdf:resource="http://biomodels.net/biology-qualifiers/is"/>
<rs:variable>y</rs:variable>
</rdf:Description>
</rs:binding>
</rdf:Description>
</rs:solution>
<rs:solution>
<rdf:Description>
<rs:binding>
<rdf:Description>
<rs:value rdf:resource="https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022"/>
<rs:variable>x</rs:variable>
</rdf:Description>
</rs:binding>
<rs:binding>
<rdf:Description>
<rs:value rdf:resource="http://biomodels.net/biology-qualifiers/is"/>
<rs:variable>y</rs:variable>
</rdf:Description>
</rs:binding>
</rdf:Description>
</rs:solution>
</rs:ResultSet>
</rdf:RDF>
Demonstrate creating a sparql query in C
#include "omexmeta/OmexMeta.h"
#include "omexmeta/OmexMetaCApi.h"
using namespace omexmeta;
int main() {
//get the link to teusink2000
const char* teusink_biomod_link = "https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml";
// download model xml, scan for rdf, create rdf graph and store in sqlite database
RDF* rdf = RDF_fromUri(teusink_biomod_link, "rdfxml");
const char* query_string = "SELECT ?x ?y\n"
"WHERE {\n"
" ?x ?y <http://identifiers.org/obo.chebi/CHEBI:17234>\n"
"}";
const char* results_formats[9] = {
"xml",
"json",
"table",
"csv",
"mkr",
"tsv",
"html",
"turtle",
"rdfxml",
};
for (int i=0; i<9; i++){
printf("Sparql results format: %s\n", results_formats[i]);
char* string = RDF_queryResultsAsString(rdf, query_string, results_formats[i]);
printf("%s\n\n", string);
free(string);
}
RDF_delete(rdf);
}
Output
Sparql results format: xml
<?xml version="1.0" encoding="utf-8"?>
<sparql xmlns="http://www.w3.org/2005/sparql-results#">
<head>
<variable name="x"/>
<variable name="y"/>
</head>
<results>
<result>
<binding name="x"><uri>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004</uri></binding>
<binding name="y"><uri>http://biomodels.net/biology-qualifiers/is</uri></binding>
</result>
<result>
<binding name="x"><uri>https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022</uri></binding>
<binding name="y"><uri>http://biomodels.net/biology-qualifiers/is</uri></binding>
</result>
</results>
</sparql>
Sparql results format: json
{
"head": {
"vars": [ "x", "y" ]
},
"results": {
"ordered" : false,
"distinct" : false,
"bindings" : [
{
"x" : { "type": "uri", "value": "https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004" },
"y" : { "type": "uri", "value": "http://biomodels.net/biology-qualifiers/is" }
},
{
"x" : { "type": "uri", "value": "https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022" },
"y" : { "type": "uri", "value": "http://biomodels.net/biology-qualifiers/is" }
}
]
}
}
Sparql results format: table
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
|
===========================================================================================================================================================================
| uri<https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004> | uri<http://biomodels.net/biology-qualifiers/is> |
| uri<https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022> | uri<http://biomodels.net/biology-qualifiers/is> |
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Sparql results format: csv
x,y
https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004,http://biomodels.net/biology-qualifiers/is
https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022,http://biomodels.net/biology-qualifiers/is
Sparql results format: mkr
result is relation with format = csv;
begin relation result;
x,y;
https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004,http://biomodels.net/biology-qualifiers/is;
https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022,http://biomodels.net/biology-qualifiers/is;
end relation result;
Sparql results format: tsv
?x ?y
<https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004> <http://biomodels.net/biology-qualifiers/is>
<https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022> <http://biomodels.net/biology-qualifiers/is>
Sparql results format: html
<?xml version="1.0" encoding="utf-8"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN"
"http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title>SPARQL Query Results</title>
</head>
<body>
<table id="results" border="1">
<tr>
<th>?x</th>
<th>?y</th>
</tr>
<tr class="result">
<td><span class="uri"><a href="https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004">https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004</a></span></td>
<td><span class="uri"><a href="http://biomodels.net/biology-qualifiers/is">http://biomodels.net/biology-qualifiers/is</a></span></td>
</tr>
<tr class="result">
<td><span class="uri"><a href="https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022">https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022</a></span></td>
<td><span class="uri"><a href="http://biomodels.net/biology-qualifiers/is">http://biomodels.net/biology-qualifiers/is</a></span></td>
</tr>
</table>
<p>Total number of rows: <span class="count">2</span>.</p>
</body>
</html>
Sparql results format: turtle
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rs: <http://www.w3.org/2001/sw/DataAccess/tests/result-set#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
[] rdf:type rs:ResultSet ;
rs:resultVariable "x" ;
rs:resultVariable "y" ;
rs:solution [ rs:binding [ rs:variable "x" ;
rs:value <https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004>
] ;
rs:binding [ rs:variable "y" ;
rs:value <http://biomodels.net/biology-qualifiers/is>
]
] ;
rs:solution [ rs:binding [ rs:variable "x" ;
rs:value <https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022>
] ;
rs:binding [ rs:variable "y" ;
rs:value <http://biomodels.net/biology-qualifiers/is>
]
] .
Sparql results format: rdfxml
<?xml version="1.0" encoding="utf-8"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:rs="http://www.w3.org/2001/sw/DataAccess/tests/result-set#">
<rs:ResultSet>
<rs:resultVariable>x</rs:resultVariable>
<rs:resultVariable>y</rs:resultVariable>
<rs:solution>
<rdf:Description>
<rs:binding>
<rdf:Description>
<rs:value rdf:resource="https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000004"/>
<rs:variable>x</rs:variable>
</rdf:Description>
</rs:binding>
<rs:binding>
<rdf:Description>
<rs:value rdf:resource="http://biomodels.net/biology-qualifiers/is"/>
<rs:variable>y</rs:variable>
</rdf:Description>
</rs:binding>
</rdf:Description>
</rs:solution>
<rs:solution>
<rdf:Description>
<rs:binding>
<rdf:Description>
<rs:value rdf:resource="https://www.ebi.ac.uk/biomodels/model/download/BIOMD0000000064.2?filename=BIOMD0000000064_url.xml#metaid_0000022"/>
<rs:variable>x</rs:variable>
</rdf:Description>
</rs:binding>
<rs:binding>
<rdf:Description>
<rs:value rdf:resource="http://biomodels.net/biology-qualifiers/is"/>
<rs:variable>y</rs:variable>
</rdf:Description>
</rs:binding>
</rdf:Description>
</rs:solution>
</rs:ResultSet>
</rdf:RDF>