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libroadrunner C API
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libRoadRunner C wrappers 2012-2013 More...
#include "rrc_exporter.h"#include "rrc_types.h"#include "rrc_utilities.h"#include "rrc_logging_api.h"#include "rrc_nom_api.h"#include "rrc_libstruct_api.h"Go to the source code of this file.
Functions | |
| C_DECL_SPEC RRHandle rrcCallConv | createRRInstance (void) |
| Initialize a new roadRunner instance and return a handle to it. More... | |
| C_DECL_SPEC RRHandle rrcCallConv | createRRInstanceEx (const char *tempFolder, const char *compiler) |
| Initialize a new roadRunner instance and return a handle to it. More... | |
| C_DECL_SPEC bool rrcCallConv | freeRRInstance (RRHandle handle) |
| Free the roadRunner instance. More... | |
| char * | getInstallFolder (void) |
| Returns the folder in which the RoadRunner wrappers is installed. More... | |
| C_DECL_SPEC bool rrcCallConv | setInstallFolder (const char *folder) |
| Set the internal string containing the folder in where the RoadRunner C wrappers is installed. More... | |
| C_DECL_SPEC char *rrcCallConv | getAPIVersion (void) |
| Retrieve the current version number of the C wrappers library. More... | |
| C_DECL_SPEC char *rrcCallConv | getCPPAPIVersion (RRHandle handle) |
| Retrieve the current version number of the C++ wrappers (Core RoadRunner wrappers) library. More... | |
| C_DECL_SPEC int rrcCallConv | getVersion () |
| C_DECL_SPEC char *rrcCallConv | getVersionStr () |
| C_DECL_SPEC char *rrcCallConv | getVersionEx () |
| C_DECL_SPEC char *rrcCallConv | getExtendedAPIInfo () |
| Retrieve extended wrappers info. More... | |
| C_DECL_SPEC char *rrcCallConv | getBuildDate (void) |
| Retrieve the current build date of the library. More... | |
| C_DECL_SPEC char *rrcCallConv | getBuildTime (void) |
| Retrieve the current build time (HH:MM:SS) of the library. More... | |
| C_DECL_SPEC char *rrcCallConv | getBuildDateTime (void) |
| Retrieve the current build date + time of the library. More... | |
| C_DECL_SPEC char *rrcCallConv | getCopyright (void) |
| Retrieve the current copyright notice for the library. More... | |
| C_DECL_SPEC char *rrcCallConv | getInfo (RRHandle handle) |
| Retrieve info about current state of roadrunner, e.g. loaded model, conservationAnalysis etc. More... | |
| C_DECL_SPEC char *rrcCallConv | getlibSBMLVersion (RRHandle handle) |
| Retrieve the current version number of the libSBML library. More... | |
| C_DECL_SPEC bool rrcCallConv | setTempFolder (RRHandle handle, const char *folder) |
| Set the path to the temporary folder where the C code will be stored. More... | |
| C_DECL_SPEC char *rrcCallConv | getTempFolder (RRHandle handle) |
| Retrieve the current temporary folder path. More... | |
| C_DECL_SPEC char *rrcCallConv | getWorkingDirectory (void) |
| Retrieve the current working directory path. More... | |
| C_DECL_SPEC char *rrcCallConv | getRRCAPILocation (void) |
| Retrieve the directory path of the shared rrCApi library. More... | |
| C_DECL_SPEC bool rrcCallConv | setCompiler (RRHandle handle, const char *fNameWithPath) |
| Set the path and filename to the compiler to be used by roadrunner. More... | |
| C_DECL_SPEC char *rrcCallConv | getCompiler (RRHandle handle) |
| Get the name of the compiler currently being used by roadrunner. | |
| C_DECL_SPEC bool rrcCallConv | setCompilerLocation (RRHandle handle, const char *folder) |
| Set the path to a folder containing the compiler to be used. More... | |
| C_DECL_SPEC char *rrcCallConv | getCompilerLocation (RRHandle handle) |
| Get the path to a folder containing the compiler being used. More... | |
| C_DECL_SPEC bool rrcCallConv | setSupportCodeFolder (RRHandle handle, const char *folder) |
| Set the path to a folder containing support code for model generation. More... | |
| C_DECL_SPEC char *rrcCallConv | getSupportCodeFolder (RRHandle handle) |
| Get the path to a folder containing support code. More... | |
| C_DECL_SPEC bool rrcCallConv | setCodeGenerationMode (RRHandle handle, int mode) |
| Set the runtime generation option [Not yet implemented]. More... | |
| C_DECL_SPEC bool rrcCallConv | hasError (void) |
| Check if there is an error string to retrieve. More... | |
| C_DECL_SPEC char *rrcCallConv | getLastError (void) |
| Retrieve the current error string. More... | |
| C_DECL_SPEC bool rrcCallConv | setComputeAndAssignConservationLaws (RRHandle handle, const bool On_Or_Off) |
| Enable or disable conservation analysis. More... | |
| C_DECL_SPEC int rrcCallConv | getComputeAndAssignConservationLaws (RRHandle handle, int *value) |
| Get the value of the moiety conservation setting. More... | |
| C_DECL_SPEC bool rrcCallConv | loadSBML (RRHandle handle, const char *sbml) |
| Load a model from an SBML string. More... | |
| C_DECL_SPEC bool rrcCallConv | loadSBMLEx (RRHandle handle, const char *sbml, bool forceRecompile) |
| Load a model from an SBML string. More... | |
| C_DECL_SPEC bool rrcCallConv | saveState (RRHandle handle, const char *filename) |
| Save a road runner instance's state to a platform-specific binary file. More... | |
| C_DECL_SPEC bool rrcCallConv | loadState (RRHandle handle, const char *filename) |
| Reload a road runner instance's state saved by saveState. More... | |
| C_DECL_SPEC bool rrcCallConv | loadSBMLFromFile (RRHandle handle, const char *fileName) |
| Load a model from a SBML file. More... | |
| C_DECL_SPEC bool rrcCallConv | loadSBMLFromFileE (RRHandle handle, const char *fileName, bool forceRecompile) |
| Load a model from a SBML file, force recompilation. More... | |
| C_DECL_SPEC bool rrcCallConv | clearModel (RRHandle handle) |
| Unload current model. More... | |
| C_DECL_SPEC bool rrcCallConv | isModelLoaded (RRHandle handle) |
| check if a model is loaded More... | |
| C_DECL_SPEC bool rrcCallConv | loadSimulationSettings (RRHandle handle, const char *fileName) |
| Load simulation settings from a file. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentSBML (RRHandle handle) |
| Retrieve the current state of the model in the form of an SBML string. More... | |
| C_DECL_SPEC char *rrcCallConv | getSBML (RRHandle handle) |
| Retrieve the SBML model that was last loaded into roadRunner. More... | |
| C_DECL_SPEC bool rrcCallConv | addSpecies (RRHandle handle, const char *sid, const char *compartment, double initialAmount, bool hasOnlySubstanceUnits, bool boundaryCondition) |
| Add a species to the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | addSpeciesNoRegen (RRHandle handle, const char *sid, const char *compartment, double initialAmount, bool hasOnlySubstanceUnits, bool boundaryCondition) |
| Add a species to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | removeSpecies (RRHandle handle, const char *sid) |
| Remove a species from the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | removeSpeciesNoRegen (RRHandle handle, const char *sid) |
| Remove a species from the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | setBoundary (RRHandle handle, const char *sid, bool boundaryCondition) |
| Set the boundary condition of an existing species. More... | |
| C_DECL_SPEC bool rrcCallConv | setBoundaryNoRegen (RRHandle handle, const char *sid, bool boundaryCondition) |
| Set the boundary condition of an existing species, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | setHasOnlySubstanceUnits (RRHandle handle, const char *sid, bool hasOnlySubstanceUnits) |
| Set the hasOnlySubstanceUnits attribute for an existing species. More... | |
| C_DECL_SPEC bool rrcCallConv | setHasOnlySubstanceUnitsNoRegen (RRHandle handle, const char *sid, bool hasOnlySubstanceUnits) |
| Set the hasOnlySubstanceUnits attribute for an existing species, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | setInitAmount (RRHandle handle, const char *sid, double initAmount) |
| Set initial amount for an existing species. Initial amount/concentration set before will be unset. More... | |
| C_DECL_SPEC bool rrcCallConv | setInitAmountNoRegen (RRHandle handle, const char *sid, double initAmount) |
| Set initial amount for an existing species, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | setInitConcentration (RRHandle handle, const char *sid, double initConcentration) |
| Set initial concentration for an existing species. Initial amount/concentration set before will be unset. More... | |
| C_DECL_SPEC bool rrcCallConv | setInitConcentrationNoRegen (RRHandle handle, const char *sid, double initConcentration) |
| Set initial concentration for an existing species, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | setConstant (RRHandle handle, const char *sid, bool constant) |
| Set the constant attribute for an existing species/ parameter/ compartment. More... | |
| C_DECL_SPEC bool rrcCallConv | setConstantNoRegen (RRHandle handle, const char *sid, bool constant) |
| Set the constant attribute for an existing species/ parameter/ compartment, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | addReactionFromSBML (RRHandle handle, const char *sbmlRep) |
| Add a reaction to the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | addReactionFromSBMLNoRegen (RRHandle handle, const char *sbmlRep) |
| Add a reaction to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | addReaction (RRHandle handle, const char *rid, const char **reactants, int numReactants, const char **products, int numProducts, const char *kineticLaw) |
| Add a reaction to the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | addReactionNoRegen (RRHandle handle, const char *rid, const char **reactants, int numReactants, const char **products, int numProducts, const char *kineticLaw) |
| Add a reaction to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | removeReaction (RRHandle handle, const char *rid) |
| Remove a reaction from the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | removeReactionNoRegen (RRHandle handle, const char *rid) |
| Remove a reaction from the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | setReversible (RRHandle handle, const char *rid, bool reversible) |
| Set the reversible attribut for an existing reaction in the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | setReversibleNoRegen (RRHandle handle, const char *rid, bool reversible) |
| Set the reversible attribut for an existing reaction in the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | setKineticLaw (RRHandle handle, const char *rid, const char *kineticLaw) |
| Set the kinetic law for a existing reaction in the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | setKineticLawNoRegen (RRHandle handle, const char *rid, const char *kineticLaw) |
| Set the kinetic law for a existing reaction in the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC char *rrcCallConv | getKineticLaw (RRHandle handle, const char *rid) |
| Get the kinetic law for a existing reaction in the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | addParameter (RRHandle handle, const char *pid, double value) |
| Add a parameter to the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | addParameterNoRegen (RRHandle handle, const char *pid, double value) |
| Add a parameter to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | removeParameter (RRHandle handle, const char *pid) |
| Remove a parameter from the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | removeParameterNoRegen (RRHandle handle, const char *pid) |
| Remove a parameter from the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | addCompartment (RRHandle handle, const char *cid, double initVolume) |
| Add a compartment to the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | addCompartmentNoRegen (RRHandle handle, const char *cid, double initVolume) |
| Add a compartment to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | removeCompartment (RRHandle handle, const char *cid) |
| Remove a compartment from the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | removeCompartmentNoRegen (RRHandle handle, const char *cid) |
| Remove a compartment from the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | addAssignmentRule (RRHandle handle, const char *vid, const char *formula) |
| Add an assignment rule to the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | addAssignmentRuleNoRegen (RRHandle handle, const char *vid, const char *formula) |
| Add an assignment rule to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | addRateRule (RRHandle handle, const char *vid, const char *formula) |
| Add a rate rule to the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | addRateRuleNoRegen (RRHandle handle, const char *vid, const char *formula) |
| Add a rate rule to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | removeRules (RRHandle handle, const char *vid) |
| Remove rules related to given variable from the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | removeRulesNoRegen (RRHandle handle, const char *vid) |
| Remove rules related to given variable from the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | addEvent (RRHandle handle, const char *eid, bool useValuesFromTriggerTime, const char *trigger) |
| Add an event to the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | addEventNoRegen (RRHandle handle, const char *eid, bool useValuesFromTriggerTime, const char *trigger) |
| Add an event to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | addTrigger (RRHandle handle, const char *eid, const char *trigger) |
| Add trigger to an existing event in the model If the given event already has a trigger object, the given trigger will replace the old trigger in the model. More... | |
| C_DECL_SPEC bool rrcCallConv | addTriggerNoRegen (RRHandle handle, const char *eid, const char *trigger) |
| Add trigger to an existing event in the model, without regenerating it The last modification must regenerate for the modifications to take effect If the given event already has a trigger object, the given trigger will replace the old trigger in the model. More... | |
| C_DECL_SPEC bool rrcCallConv | setPersistent (RRHandle handle, const char *eid, bool persistent) |
| Set the persistent attribute of the trigger of given event. More... | |
| C_DECL_SPEC bool rrcCallConv | setPersistentNoRegen (RRHandle handle, const char *eid, bool persistent) |
| Set the persistent attribute of the trigger of given event, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | setTriggerInitialValue (RRHandle handle, const char *eid, bool initValue) |
| Set the initial value attribute of the trigger of given event. More... | |
| C_DECL_SPEC bool rrcCallConv | setTriggerInitialValueNoRegen (RRHandle handle, const char *eid, bool initValue) |
| Set the initial value attribute of the trigger of given event, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | addPriority (RRHandle handle, const char *eid, const char *priority) |
| Add priority to an existing event in the model If the given event already has a priority object, the given priority will replace the old priority in the model. More... | |
| C_DECL_SPEC bool rrcCallConv | addPriorityNoRegen (RRHandle handle, const char *eid, const char *priority) |
| Add priority to an existing event in the model, without regenerating it The last modification must regenerate for the modifications to take effect If the given event already has a priority object, the given priority will replace the old priority in the model. More... | |
| C_DECL_SPEC bool rrcCallConv | addDelay (RRHandle handle, const char *eid, const char *delay) |
| Add delay to an existing event in the model If the given event already has a delay object, the given delay will replace the old delay in the model. More... | |
| C_DECL_SPEC bool rrcCallConv | addDelayNoRegen (RRHandle handle, const char *eid, const char *delay) |
| Add delay to an existing event in the model, without regenerating it The last modification must regenerate for the modifications to take effect If the given event already has a delay object, the given delay will replace the old delay in the model. More... | |
| C_DECL_SPEC bool rrcCallConv | addEventAssignment (RRHandle handle, const char *eid, const char *vid, const char *formula) |
| Add an event assignment to an existing event in the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | addEventAssignmentNoRegen (RRHandle handle, const char *eid, const char *vid, const char *formula) |
| Add an event assignment to an existing event in the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | removeEventAssignments (RRHandle handle, const char *eid, const char *vid) |
| Remove event assignments for given variable from an existing event. More... | |
| C_DECL_SPEC bool rrcCallConv | removeEventAssignmentsNoRegen (RRHandle handle, const char *eid, const char *vid) |
| Remove event assignments for given variable from an existing event, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | removeEvent (RRHandle handle, const char *eid) |
| Remove an event from the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | removeEventsNoRegen (RRHandle handle, const char *eid) |
| Remove an event from the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More... | |
| C_DECL_SPEC bool rrcCallConv | validateCurrentSBML (RRHandle handle) |
| Validate the current SBML file. More... | |
| C_DECL_SPEC char *rrcCallConv | getParamPromotedSBML (RRHandle handle, const char *sArg) |
| Promote any local parameters to global status. More... | |
| C_DECL_SPEC bool rrcCallConv | setConfigurationXML (RRHandle handle, const char *caps) |
| Set the simulator's capabilities. More... | |
| C_DECL_SPEC char *rrcCallConv | getConfigurationXML (RRHandle handle) |
| Get the simulator's capabilities. More... | |
| C_DECL_SPEC int rrcCallConv | getNumRegisteredIntegrators () |
| Get the number of registered integrators. More... | |
| C_DECL_SPEC char *rrcCallConv | getRegisteredIntegratorName (int n) |
| Get the name of a registered integrator (e.g. cvode etc.) More... | |
| C_DECL_SPEC char *rrcCallConv | getRegisteredIntegratorHint (int n) |
| Get the hint of a registered integrator (e.g. cvode etc.) More... | |
| C_DECL_SPEC char *rrcCallConv | getRegisteredIntegratorDescription (int n) |
| Get the description of a registered integrator (e.g. cvode etc.) More... | |
| C_DECL_SPEC int rrcCallConv | getNumInstantiatedIntegrators (RRHandle handle) |
| Get the number of instantiated integrators. \description To instantiate an integrator, use setCurrentIntegrator. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentIntegrator (RRHandle handle, char *nameOfIntegrator) |
| Specify the current integrator to be used for simulation. \description This method instantiates a new integrator of the given type (e.g. cvode, gillespie) if one does not currently exist. Otherwise, the existing integrator of this type is used. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentIntegratorName (RRHandle handle) |
| Obtain a description of the current integrator. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentIntegratorDescription (RRHandle handle) |
| Obtain a description of the current integrator. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentIntegratorHint (RRHandle handle) |
| Obtain a short hint for the current integrator. More... | |
| C_DECL_SPEC int rrcCallConv | getNumberOfCurrentIntegratorParameters (RRHandle handle) |
| Get the number of adjustable settings for the current integrator. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentIntegratorNthParameterName (RRHandle handle, int n) |
| Get the name of a parameter of the current integrator. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentIntegratorNthParameterDescription (RRHandle handle, int n) |
| Get the description of a parameter of the current integrator. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentIntegratorNthParameterDisplayName (RRHandle handle, int n) |
| Get the display name of a parameter of the current integrator. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentIntegratorNthParameterHint (RRHandle handle, int n) |
| Get the hint of a parameter of the current integrator. More... | |
| C_DECL_SPEC int rrcCallConv | getCurrentIntegratorNthParameterType (RRHandle handle, int n) |
| Get the type of a parameter of the current integrator. More... | |
| C_DECL_SPEC int rrcCallConv | resetCurrentIntegratorParameters (RRHandle handle) |
| Reset the integrator parameters to their default values. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getListOfCurrentIntegratorParameterNames (RRHandle handle) |
| Get the names of adjustable settings for the current integrator. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentIntegratorParameterDescription (RRHandle handle, char *parameterName) |
| Get the description for a specific integrator setting. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentIntegratorParameterHint (RRHandle handle, char *parameterName) |
| Get the hint for a specific integrator setting. More... | |
| C_DECL_SPEC int rrcCallConv | getCurrentIntegratorParameterType (RRHandle handle, char *parameterName) |
| Get the return type for a specific integrator setting. More... | |
| C_DECL_SPEC int rrcCallConv | getCurrentIntegratorParameterInt (RRHandle handle, char *parameterName) |
| Get the integer value for a specific integrator setting. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentIntegratorParameterInt (RRHandle handle, char *parameterName, int value) |
| Set the integer value for a specific integrator setting. More... | |
| C_DECL_SPEC unsigned int rrcCallConv | getCurrentIntegratorParameterUInt (RRHandle handle, char *parameterName) |
| Get the unsigned integer value for a specific integrator setting. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentIntegratorParameterUInt (RRHandle handle, char *parameterName, unsigned int value) |
| Set the unsigned integer value for a specific integrator setting. More... | |
| C_DECL_SPEC double rrcCallConv | getCurrentIntegratorParameterDouble (RRHandle handle, char *parameterName) |
| Get the double value for a specific integrator setting. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentIntegratorParameterDouble (RRHandle handle, char *parameterName, double value) |
| Set the double value for a specific integrator setting. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentIntegratorParameterString (RRHandle handle, char *parameterName) |
| Get the string value for a specific integrator setting. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentIntegratorParameterString (RRHandle handle, char *parameterName, char *value) |
| Set the string value for a specific integrator setting. More... | |
| C_DECL_SPEC int rrcCallConv | getCurrentIntegratorParameterBoolean (RRHandle handle, char *parameterName) |
| Get the boolean value for a specific integrator setting. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentIntegratorParameterBoolean (RRHandle handle, char *parameterName, int value) |
| Set the boolean value for a specific integrator setting. More... | |
| C_DECL_SPEC int rrcCallConv | getCurrentIntegratorParameterDoubleArray (RRHandle handle, char *parameterName, double **value, int *len) |
| Get the double array value for a specific integrator setting. Should only used for absoluate tolerace. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentIntegratorParameterDoubleArray (RRHandle handle, char *parameterName, double *value, int len) |
| Set the double array value for a specific integrator setting. Should only used for absoluate tolerace. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentIntegratorScalarConcentrationTolerance (RRHandle handle, double value) |
| Set the scalar tolerance based on concentration for the current integrator. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentIntegratorVectorConcentrationTolerance (RRHandle handle, double *value, int len) |
| Set the vector tolerance based on concentration for the current integrator. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentIntegratorIndividualTolerance (RRHandle handle, char *sid, double value) |
| Set the double array value for a specific integrator setting. Should only used for absoluate tolerace. More... | |
| C_DECL_SPEC int rrcCallConv | getNumRegisteredSteadyStateSolvers () |
| Get the number of registered steady state solvers. More... | |
| C_DECL_SPEC char *rrcCallConv | getRegisteredSteadyStateSolverName (int n) |
| Get the name of a registered steady state solver (e.g. cvode etc.) More... | |
| C_DECL_SPEC char *rrcCallConv | getRegisteredSteadyStateSolverHint (int n) |
| Get the hint of a registered steady state solver (e.g. cvode etc.) More... | |
| C_DECL_SPEC char *rrcCallConv | getRegisteredSteadyStateSolverDescription (int n) |
| Get the description of a registered steady state solver (e.g. cvode etc.) More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentSteadyStateSolver (RRHandle handle, char *nameOfSteadyStateSolver) |
| Specify the current steady state solver to be used for simulation. \description This method instantiates a new steady state solver of the given type (e.g. cvode, gillespie) if one does not currently exist. Otherwise, the existing steady state solver of this type is used. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentSteadyStateSolverName (RRHandle handle) |
| Obtain a description of the current steady state solver. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentSteadyStateSolverDescription (RRHandle handle) |
| Obtain a description of the current steady state solver. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentSteadyStateSolverHint (RRHandle handle) |
| Obtain a short hint for the current steady state solver. More... | |
| C_DECL_SPEC int rrcCallConv | getNumberOfCurrentSteadyStateSolverParameters (RRHandle handle) |
| Get the number of adjustable settings for the current steady state solver. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentSteadyStateSolverNthParameterName (RRHandle handle, int n) |
| Get the name of a parameter of the current steady state solver. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentSteadyStateSolverNthParameterDisplayName (RRHandle handle, int n) |
| Get the display name of a parameter of the current steady state solver. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentSteadyStateSolverNthParameterDescription (RRHandle handle, int n) |
| Get the description of a parameter of the current steady state solver. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentSteadyStateSolverNthParameterHint (RRHandle handle, int n) |
| Get the hint of a parameter of the current steady state solver. More... | |
| C_DECL_SPEC int rrcCallConv | getCurrentSteadyStateSolverNthParameterType (RRHandle handle, int n) |
| Get the type of a parameter of the current steady state solver. More... | |
| C_DECL_SPEC int rrcCallConv | resetCurrentSteadyStateSolverParameters (RRHandle handle) |
| Reset the steady state solver parameters to their default values. More... | |
| C_DECL_SPEC const char *rrcCallConv | solverTypeToString (int code) |
| Get a string description of the type [STATIC MEMORY - DO NOT FREE] \description Can call on return value of e.g. getCurrentSteadyStateSolverNthParameterType to retrieve human-readable string representation. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getListOfCurrentSteadyStateSolverParameterNames (RRHandle handle) |
| Get the names of adjustable settings for the current steady state solver. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentSteadyStateSolverParameterDescription (RRHandle handle, char *parameterName) |
| Get the description for a specific steady state solver setting. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentSteadyStateSolverParameterHint (RRHandle handle, char *parameterName) |
| Get the hint for a specific steady state solver setting. More... | |
| C_DECL_SPEC int rrcCallConv | getCurrentSteadyStateSolverParameterType (RRHandle handle, char *parameterName) |
| Get the return type for a specific steady state solver setting. More... | |
| C_DECL_SPEC int rrcCallConv | getCurrentSteadyStateSolverParameterInt (RRHandle handle, char *parameterName) |
| Get the integer value for a specific steady state solver setting. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentSteadyStateSolverParameterInt (RRHandle handle, char *parameterName, int value) |
| Set the integer value for a specific steady state solver setting. More... | |
| C_DECL_SPEC unsigned int rrcCallConv | getCurrentSteadyStateSolverParameterUInt (RRHandle handle, char *parameterName) |
| Get the unsigned integer value for a specific steady state solver setting. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentSteadyStateSolverParameterUInt (RRHandle handle, char *parameterName, unsigned int value) |
| Set the unsigned integer value for a specific steady state solver setting. More... | |
| C_DECL_SPEC double rrcCallConv | getCurrentSteadyStateSolverParameterDouble (RRHandle handle, char *parameterName) |
| Get the double value for a specific steady state solver setting. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentSteadyStateSolverParameterDouble (RRHandle handle, char *parameterName, double value) |
| Set the double value for a specific steady state solver setting. More... | |
| C_DECL_SPEC char *rrcCallConv | getCurrentSteadyStateSolverParameterString (RRHandle handle, char *parameterName) |
| Get the string value for a specific steady state solver setting. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentSteadyStateSolverParameterString (RRHandle handle, char *parameterName, char *value) |
| Set the string value for a specific steady state solver setting. More... | |
| C_DECL_SPEC int rrcCallConv | getCurrentSteadyStateSolverParameterBoolean (RRHandle handle, char *parameterName) |
| Get the boolean value for a specific steady state solver setting. More... | |
| C_DECL_SPEC int rrcCallConv | setCurrentSteadyStateSolverParameterBoolean (RRHandle handle, char *parameterName, int value) |
| Set the boolean value for a specific steady state solver setting. More... | |
| C_DECL_SPEC bool rrcCallConv | setTimeStart (RRHandle handle, double timeStart) |
| Set the time start for a time course simulation. More... | |
| C_DECL_SPEC bool rrcCallConv | setTimeEnd (RRHandle handle, double timeEnd) |
| Set the time end for a time course simulation. More... | |
| C_DECL_SPEC bool rrcCallConv | setNumPoints (RRHandle handle, int numberOfPoints) |
| Set the number of points to generate in a time course simulation. More... | |
| C_DECL_SPEC bool rrcCallConv | setTimeCourseSelectionList (RRHandle handle, const char *list) |
| Set the selection list for output from simulate(void) or simulateEx(void) More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getTimeCourseSelectionList (RRHandle handle) |
| Get the current selection list for simulate(void) or simulateEx(void) More... | |
| C_DECL_SPEC RRCDataPtr rrcCallConv | simulate (RRHandle handle) |
| Carry out a time-course simulation. setTimeStart, setTimeEnd, setNumPoints, etc are used to set the simulation characteristics. More... | |
| C_DECL_SPEC RRCDataPtr rrcCallConv | getSimulationResult (RRHandle handle) |
| Retrieve the result of the last simulation. More... | |
| C_DECL_SPEC RRCDataPtr rrcCallConv | simulateEx (RRHandle handle, const double timeStart, const double timeEnd, const int numberOfPoints) |
| Carry out a time-course simulation based on the given arguments, time start, time end and number of points. More... | |
| C_DECL_SPEC bool rrcCallConv | oneStep (RRHandle handle, const double currentTime, const double stepSize, double *value) |
| Carry out a one step integration of the model. More... | |
| C_DECL_SPEC bool rrcCallConv | getTimeStart (RRHandle handle, double *timeStart) |
| Get the value of the current time start. More... | |
| C_DECL_SPEC bool rrcCallConv | getTimeEnd (RRHandle handle, double *timeEnd) |
| Get the value of the current time end. More... | |
| C_DECL_SPEC bool rrcCallConv | getNumPoints (RRHandle handle, int *numPoints) |
| Get the value of the current number of points. More... | |
| C_DECL_SPEC bool rrcCallConv | steadyState (RRHandle handle, double *value) |
| Compute the steady state of the current model. More... | |
| C_DECL_SPEC RRVectorPtr rrcCallConv | computeSteadyStateValues (RRHandle handle) |
| A convenient method for returning a vector of the steady state species concentrations. More... | |
| C_DECL_SPEC bool rrcCallConv | setSteadyStateSelectionList (RRHandle handle, const char *list) |
| Set the selection list of the steady state analysis. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getSteadyStateSelectionList (RRHandle handle) |
| Get the selection list for the steady state analysis. More... | |
| C_DECL_SPEC bool rrcCallConv | getValue (RRHandle handle, const char *symbolId, double *value) |
| Get the value for a given symbol, use getAvailableTimeCourseSymbols(void) for a list of symbols. More... | |
| C_DECL_SPEC bool rrcCallConv | setValue (RRHandle handle, const char *symbolId, const double value) |
| Set the value for a given symbol, use getAvailableTimeCourseSymbols(void) for a list of symbols. More... | |
| C_DECL_SPEC RRVectorPtr rrcCallConv | getFloatingSpeciesConcentrations (RRHandle handle) |
| Retrieve in a vector the concentrations for all the floating species. More... | |
| C_DECL_SPEC RRVectorPtr rrcCallConv | getFloatingSpeciesAmounts (RRHandle handle) |
| C_DECL_SPEC RRVectorPtr rrcCallConv | getBoundarySpeciesConcentrations (RRHandle handle) |
| Retrieve the concentrations for all the boundary species in a vector. More... | |
| C_DECL_SPEC RRVectorPtr rrcCallConv | getBoundarySpeciesAmounts (RRHandle handle) |
| C_DECL_SPEC RRVectorPtr rrcCallConv | getGlobalParameterValues (RRHandle handle) |
| Retrieve the values for all the global parameter values in a vector. More... | |
| C_DECL_SPEC bool rrcCallConv | setBoundarySpeciesByIndex (RRHandle handle, const unsigned int index, const double value) |
| Set the concentration for a particular boundary species. More... | |
| C_DECL_SPEC bool rrcCallConv | setFloatingSpeciesInitialConcentrationByIndex (RRHandle handle, int index, double value) |
| Set the initial concentration for a particular floating species. More... | |
| C_DECL_SPEC bool rrcCallConv | getFloatingSpeciesInitialConcentrationByIndex (RRHandle handle, int index, double *value) |
| Get the initial concentration for a particular floating species. More... | |
| C_DECL_SPEC bool rrcCallConv | setFloatingSpeciesByIndex (RRHandle handle, const int index, const double value) |
| Set the concentration for a particular floating species. More... | |
| C_DECL_SPEC bool rrcCallConv | setGlobalParameterByIndex (RRHandle handle, const int index, const double value) |
| Set the value for a particular global parameter. More... | |
| C_DECL_SPEC bool rrcCallConv | getBoundarySpeciesByIndex (RRHandle handle, const int index, double *value) |
| Retrieve the concentration for a particular floating species. More... | |
| C_DECL_SPEC bool rrcCallConv | getFloatingSpeciesByIndex (RRHandle handle, const int index, double *value) |
| Retrieve the concentration for a particular floating species. More... | |
| C_DECL_SPEC bool rrcCallConv | getGlobalParameterByIndex (RRHandle handle, const int index, double *value) |
| Retrieve the global parameter value. More... | |
| C_DECL_SPEC bool rrcCallConv | getCompartmentByIndex (RRHandle handle, const int index, double *value) |
| Retrieve the compartment volume for a particular compartment. More... | |
| C_DECL_SPEC bool rrcCallConv | setCompartmentByIndex (RRHandle handle, const int index, const double value) |
| Set the volume for a particular compartment. More... | |
| C_DECL_SPEC bool rrcCallConv | setFloatingSpeciesConcentrations (RRHandle handle, const RRVectorPtr vec) |
| Set the floating species concentration to the vector vec. More... | |
| C_DECL_SPEC bool rrcCallConv | setBoundarySpeciesConcentrations (RRHandle handle, const RRVectorPtr vec) |
| Set the boundary species concentration to the vector vec. More... | |
| C_DECL_SPEC RRDoubleMatrixPtr rrcCallConv | getFullJacobian (RRHandle handle) |
| Retrieve the full Jacobian for the current model. More... | |
| C_DECL_SPEC RRDoubleMatrixPtr rrcCallConv | getReducedJacobian (RRHandle handle) |
| Retrieve the reduced Jacobian for the current model. More... | |
| C_DECL_SPEC RRDoubleMatrixPtr rrcCallConv | getEigenvalues (RRHandle handle) |
| Retrieve the eigenvalue matrix for the current model. More... | |
| C_DECL_SPEC RRDoubleMatrixPtr rrcCallConv | getStoichiometryMatrix (RRHandle handle) |
| Retrieve the stoichiometry matrix for the current model. More... | |
| C_DECL_SPEC RRDoubleMatrixPtr rrcCallConv | getLinkMatrix (RRHandle handle) |
| Retrieve the Link matrix for the current model. More... | |
| C_DECL_SPEC RRDoubleMatrixPtr rrcCallConv | getNrMatrix (RRHandle handle) |
| Retrieve the reduced stoichiometry matrix for the current model. More... | |
| C_DECL_SPEC RRDoubleMatrixPtr rrcCallConv | getConservationMatrix (RRHandle handle) |
| Retrieve the conservation matrix for the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | setFloatingSpeciesInitialConcentrations (RRHandle handle, const RRVectorPtr vec) |
| Set the initial floating species concentrations. More... | |
| C_DECL_SPEC RRVectorPtr rrcCallConv | getFloatingSpeciesInitialConcentrations (RRHandle handle) |
| Get the initial floating species concentrations. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getFloatingSpeciesInitialConditionIds (RRHandle handle) |
| Get the initial floating species Ids. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getFloatingSpeciesInitialConcentrationIds (RRHandle handle) |
| Get the initial floating species Ids. More... | |
| C_DECL_SPEC int rrcCallConv | getNumberOfReactions (RRHandle handle) |
| Obtain the number of reactions in the loaded model. More... | |
| C_DECL_SPEC bool rrcCallConv | getReactionRate (RRHandle handle, const int index, double *rate) |
| Retrieve a give reaction rate as indicated by the index parameter. More... | |
| C_DECL_SPEC RRVectorPtr rrcCallConv | getReactionRates (RRHandle handle) |
| Retrieve a vector of reaction rates as determined by the current state of the model. More... | |
| C_DECL_SPEC RRVectorPtr rrcCallConv | getReactionRatesEx (RRHandle handle, const RRVectorPtr vec) |
| Retrieve a vector of reaction rates given a vector of species concentrations. More... | |
| C_DECL_SPEC RRVectorPtr rrcCallConv | getRatesOfChange (RRHandle handle) |
| Retrieve the vector of rates of change as determined by the current state of the model. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getRatesOfChangeIds (RRHandle handle) |
| Retrieve the string list of rates of change Ids. More... | |
| C_DECL_SPEC bool rrcCallConv | getRateOfChange (RRHandle handle, const int, double *value) |
| Retrieve the rate of change for a given floating species. More... | |
| C_DECL_SPEC RRVectorPtr rrcCallConv | getRatesOfChangeEx (RRHandle handle, const RRVectorPtr vec) |
| Retrieve the vector of rates of change given a vector of floating species concentrations. More... | |
| C_DECL_SPEC bool rrcCallConv | evalModel (RRHandle handle) |
| Evaluate the current model, that it update all assignments and rates of change. Do not carry out an integration step. More... | |
| C_DECL_SPEC int rrcCallConv | getNumberOfCompartments (RRHandle handle) |
| Returns the number of compartments in the model. More... | |
| C_DECL_SPEC int rrcCallConv | getNumberOfBoundarySpecies (RRHandle handle) |
| Returns the number of boundary species in the model. More... | |
| C_DECL_SPEC int rrcCallConv | getNumberOfFloatingSpecies (RRHandle handle) |
| Returns the number of floating species in the model. More... | |
| C_DECL_SPEC int rrcCallConv | getNumberOfGlobalParameters (RRHandle handle) |
| Returns the number of global parameters in the model. More... | |
| C_DECL_SPEC int rrcCallConv | getNumberOfDependentSpecies (RRHandle handle) |
| Returns the number of dependent species in the model. More... | |
| C_DECL_SPEC int rrcCallConv | getNumberOfIndependentSpecies (RRHandle handle) |
| Returns the number of independent species in the model. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getReactionIds (RRHandle handle) |
| Obtain the list of reaction Ids. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getBoundarySpeciesIds (RRHandle handle) |
| Obtain the list of boundary species Ids. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getBoundarySpeciesConcentrationIds (RRHandle handle) |
| Obtain the list of boundary species concentration Ids. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getFloatingSpeciesIds (RRHandle handle) |
| Obtain the list of floating species Id. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getDependentFloatingSpeciesIds (RRHandle handle) |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getFloatingSpeciesConcentrationIds (RRHandle handle) |
| Obtain the list of floating species concentrations Id. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getGlobalParameterIds (RRHandle handle) |
| Obtain the list of global parameter Ids. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getCompartmentIds (RRHandle handle) |
| Obtain the list of compartment Ids. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getEigenvalueIds (RRHandle handle) |
| Obtain the list of eigenvalue Ids. More... | |
| C_DECL_SPEC RRListPtr rrcCallConv | getAvailableTimeCourseSymbols (RRHandle handle) |
| Obtain the list of all available symbols. More... | |
| C_DECL_SPEC RRListPtr rrcCallConv | getAvailableSteadyStateSymbols (RRHandle handle) |
| Obtain the list of all available steady state symbols. More... | |
| C_DECL_SPEC RRListPtr rrcCallConv | getElasticityCoefficientIds (RRHandle handle) |
| Obtain the list of elasticity coefficient Ids. More... | |
| C_DECL_SPEC RRListPtr rrcCallConv | getUnscaledFluxControlCoefficientIds (RRHandle handle) |
| Obtain the list of unscaled flux control coefficient Ids. More... | |
| C_DECL_SPEC RRListPtr rrcCallConv | getFluxControlCoefficientIds (RRHandle handle) |
| Obtain the list of flux control coefficient Ids. More... | |
| C_DECL_SPEC RRListPtr rrcCallConv | getUnscaledConcentrationControlCoefficientIds (RRHandle handle) |
| Obtain the list of unscaled concentration control coefficient Ids. More... | |
| C_DECL_SPEC RRListPtr rrcCallConv | getConcentrationControlCoefficientIds (RRHandle handle) |
| Obtain the list of concentration coefficient Ids. More... | |
| C_DECL_SPEC RRDoubleMatrixPtr rrcCallConv | getUnscaledElasticityMatrix (RRHandle handle) |
| Retrieve the unscaled elasticity matrix for the current model. More... | |
| C_DECL_SPEC RRDoubleMatrixPtr rrcCallConv | getScaledElasticityMatrix (RRHandle handle) |
| Retrieve the scaled elasticity matrix for the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | getScaledFloatingSpeciesElasticity (RRHandle handle, const char *reactionId, const char *speciesId, double *value) |
| Retrieve the scaled elasticity matrix for the current model. More... | |
| C_DECL_SPEC RRDoubleMatrixPtr rrcCallConv | getUnscaledConcentrationControlCoefficientMatrix (RRHandle handle) |
| Retrieve the matrix of unscaled concentration control coefficients for the current model. More... | |
| C_DECL_SPEC RRDoubleMatrixPtr rrcCallConv | getScaledConcentrationControlCoefficientMatrix (RRHandle handle) |
| Retrieve the matrix of scaled concentration control coefficients for the current model. More... | |
| C_DECL_SPEC RRDoubleMatrixPtr rrcCallConv | getUnscaledFluxControlCoefficientMatrix (RRHandle handle) |
| Retrieve the matrix of unscaled flux control coefficients for the current model. More... | |
| C_DECL_SPEC RRDoubleMatrixPtr rrcCallConv | getScaledFluxControlCoefficientMatrix (RRHandle handle) |
| Retrieve the matrix of scaled flux control coefficients for the current model. More... | |
| C_DECL_SPEC bool rrcCallConv | getuCC (RRHandle handle, const char *variable, const char *parameter, double *value) |
| Retrieve a single unscaled control coefficient. More... | |
| C_DECL_SPEC bool rrcCallConv | getCC (RRHandle handle, const char *variable, const char *parameter, double *value) |
| Retrieve a single control coefficient. More... | |
| C_DECL_SPEC bool rrcCallConv | getEE (RRHandle handle, const char *name, const char *species, double *value) |
| Retrieve a single elasticity coefficient. More... | |
| C_DECL_SPEC bool rrcCallConv | getuEE (RRHandle handle, const char *name, const char *species, double *value) |
| Retrieve a single unscaled elasticity coefficient. More... | |
| C_DECL_SPEC bool rrcCallConv | getSeed (RRHandle handle, long *seed) |
| Determine the current seed used by the random generator. More... | |
| C_DECL_SPEC bool rrcCallConv | setSeed (RRHandle handle, long seed) |
| Set the current seed used by the random generator. More... | |
| C_DECL_SPEC RRCDataPtr rrcCallConv | gillespie (RRHandle handle) |
| Carry out a time-course simulation using the Gillespie algorithm with variable step size. setTimeStart, setTimeEnd, etc are used to set the simulation characteristics. More... | |
| C_DECL_SPEC RRCDataPtr rrcCallConv | gillespieEx (RRHandle handle, double timeStart, double timeEnd) |
| Carry out a time-course simulation using the Gillespie algorithm based on the given arguments, time start, time end and number of points. More... | |
| C_DECL_SPEC RRCDataPtr rrcCallConv | gillespieOnGrid (RRHandle handle) |
| Carry out a time-course simulation using the Gillespie algorithm with fixed step size. setTimeStart, setTimeEnd, setNumPoints, etc are used to set the simulation characteristics. More... | |
| C_DECL_SPEC RRCDataPtr rrcCallConv | gillespieOnGridEx (RRHandle handle, double timeStart, double timeEnd, int numberOfPoints) |
| Carry out a time-course simulation using the Gillespie algorithm with fixed step size based on the given arguments, time start, time end, and number of points. More... | |
| C_DECL_SPEC RRCDataPtr rrcCallConv | gillespieMeanOnGrid (RRHandle handle, int numberOfSimulations) |
| Carry out a series of time-course simulations using the Gillespie algorithm with fixed step size, then return the average of the simulations. setTimeStart, setTimeEnd, setNumPoints, etc are used to set the simulation characteristics. More... | |
| C_DECL_SPEC RRCDataPtr rrcCallConv | gillespieMeanOnGridEx (RRHandle handle, double timeStart, double timeEnd, int numberOfPoints, int numberOfSimulations) |
| Carry out a series of time-course simulations using the Gillespie algorithm with fixed step size, then return the average of the simulations. Based on the given arguments, time start, time end, and number of points. More... | |
| C_DECL_SPEC RRCDataPtr rrcCallConv | gillespieMeanSDOnGrid (RRHandle handle, int numberOfSimulations) |
| Carry out a series of time-course simulations using the Gillespie algorithm with fixed step size, then return the average and standard deviation of the simulations. setTimeStart, setTimeEnd, setNumPoints, etc are used to set the simulation characteristics. More... | |
| C_DECL_SPEC RRCDataPtr rrcCallConv | gillespieMeanSDOnGridEx (RRHandle handle, double timeStart, double timeEnd, int numberOfSteps, int numberOfSimulations) |
| Carry out a series of time-course simulations using the Gillespie algorithm with fixed step size, then return the average and standard deviation of the simulations. Based on the given arguments, time start, time end, number of points, and number of simulations. More... | |
| C_DECL_SPEC bool rrcCallConv | reset (RRHandle handle) |
| Resets all variables of the model to their current initial values. Does not change the parameters. More... | |
| C_DECL_SPEC bool rrcCallConv | resetAll (RRHandle handle) |
| Resets all variables of the model to their current initial values, and resets all parameters to their original values. More... | |
| C_DECL_SPEC bool rrcCallConv | resetToOrigin (RRHandle handle) |
| Resets the model to the state in which it was first loaded, including initial conditions, variables, and parameters. More... | |
| C_DECL_SPEC bool rrcCallConv | resetParameter (RRHandle handle) |
| Resets all parameters of the model to their current initial values. More... | |
| C_DECL_SPEC int rrcCallConv | setConfigBool (const char *key, int value) |
| Set a boolean configuration value. More... | |
| C_DECL_SPEC int rrcCallConv | getConfigBool (const char *key) |
| Get a boolean configuration value. More... | |
| C_DECL_SPEC int rrcCallConv | setConfigInt (const char *key, int value) |
| Set an integer configuration value. More... | |
| C_DECL_SPEC int rrcCallConv | getConfigInt (const char *key) |
| Get an integer configuration value. More... | |
| C_DECL_SPEC int rrcCallConv | setConfigDouble (const char *key, double value) |
| Set a double configuration value. More... | |
| C_DECL_SPEC int rrcCallConv | _getNumIndFloatingSpecies (RRHandle handle) |
| C_DECL_SPEC int rrcCallConv | _getNumRateRules (RRHandle handle) |
| C_DECL_SPEC double rrcCallConv | _getTime (RRHandle handle) |
| C_DECL_SPEC int rrcCallConv | _getStateVector (RRHandle handle) |
| C_DECL_SPEC void rrcCallConv | _getStateVectorRate (RRHandle handle, double time, double *value) |
| C_DECL_SPEC double rrcCallConv | getConfigDouble (const char *key) |
| Get a double configuration value. More... | |
| C_DECL_SPEC RRStringArrayPtr rrcCallConv | getListOfConfigKeys () |
| Get a list of all possible config keys. | |
libRoadRunner C wrappers 2012-2013
<-----------------------------------------------------------— This file is part of libRoadRunner. See http://code.google.com/p/roadrunnerlib/ for more details.
Copyright (C) 2012 University of Washington, Seattle, WA, USA
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.
In plain english this means:
You CAN freely download and use this software, in whole or in part, for personal, company internal, or commercial purposes;
You CAN use the software in packages or distributions that you create.
You SHOULD include a copy of the license in any redistribution you may make;
You are NOT required include the source of software, or of any modifications you may have made to it, in any redistribution you may assemble that includes it.
YOU CANNOT:
redistribute any piece of this software without proper attribution;
| C_DECL_SPEC int rrcCallConv _getNumIndFloatingSpecies | ( | RRHandle | handle | ) |
| C_DECL_SPEC int rrcCallConv _getNumRateRules | ( | RRHandle | handle | ) |
| C_DECL_SPEC int rrcCallConv _getStateVector | ( | RRHandle | handle | ) |
| C_DECL_SPEC void rrcCallConv _getStateVectorRate | ( | RRHandle | handle, |
| double | time, | ||
| double * | value | ||
| ) |
| C_DECL_SPEC double rrcCallConv _getTime | ( | RRHandle | handle | ) |
| C_DECL_SPEC char* rrcCallConv getParamPromotedSBML | ( | RRHandle | handle, |
| const char * | sArg | ||
| ) |
Promote any local parameters to global status.
This routine will convert any local reaction parameters and promote them to global status. The promoted parameters are prefixed with the name of the reaction to make them unique.
| [in] | handle | Handle to a RoadRunner instance |
| [in] | sArg | points to the SBML model to promote |
| C_DECL_SPEC int rrcCallConv getVersion | ( | ) |
Get the version number.
returns the individual version numbers as XXYYZZ where XX is the major version, YY the minor and ZZ the revision, eg 10000, or 10100, 20000 etc
| C_DECL_SPEC char* rrcCallConv getVersionEx | ( | ) |
returns something like "1.0.0; compiled with clang "3.3 (tags/RELEASE_33/final)" on date Dec 8 2013, 17:24:57'
| C_DECL_SPEC char* rrcCallConv getVersionStr | ( | ) |
returns roadrunner as a string, i.e. "1.0.0"
1.9.1