Add or remove species or reactions without modifying SBML files and reloading. More...

Functions
C_DECL_SPEC bool rrcCallConv	addSpecies (RRHandle handle, const char sid, const char compartment, double initialAmount, bool hasOnlySubstanceUnits, bool boundaryCondition)
	Add a species to the current model. More...

C_DECL_SPEC bool rrcCallConv	addSpeciesNoRegen (RRHandle handle, const char sid, const char compartment, double initialAmount, bool hasOnlySubstanceUnits, bool boundaryCondition)
	Add a species to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	removeSpecies (RRHandle handle, const char *sid)
	Remove a species from the current model. More...

C_DECL_SPEC bool rrcCallConv	removeSpeciesNoRegen (RRHandle handle, const char *sid)
	Remove a species from the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	setBoundary (RRHandle handle, const char *sid, bool boundaryCondition)
	Set the boundary condition of an existing species. More...

C_DECL_SPEC bool rrcCallConv	setBoundaryNoRegen (RRHandle handle, const char *sid, bool boundaryCondition)
	Set the boundary condition of an existing species, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	setHasOnlySubstanceUnits (RRHandle handle, const char *sid, bool hasOnlySubstanceUnits)
	Set the hasOnlySubstanceUnits attribute for an existing species. More...

C_DECL_SPEC bool rrcCallConv	setHasOnlySubstanceUnitsNoRegen (RRHandle handle, const char *sid, bool hasOnlySubstanceUnits)
	Set the hasOnlySubstanceUnits attribute for an existing species, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	setInitAmount (RRHandle handle, const char *sid, double initAmount)
	Set initial amount for an existing species. Initial amount/concentration set before will be unset. More...

C_DECL_SPEC bool rrcCallConv	setInitAmountNoRegen (RRHandle handle, const char *sid, double initAmount)
	Set initial amount for an existing species, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	setInitConcentration (RRHandle handle, const char *sid, double initConcentration)
	Set initial concentration for an existing species. Initial amount/concentration set before will be unset. More...

C_DECL_SPEC bool rrcCallConv	setInitConcentrationNoRegen (RRHandle handle, const char *sid, double initConcentration)
	Set initial concentration for an existing species, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	setConstant (RRHandle handle, const char *sid, bool constant)
	Set the constant attribute for an existing species/ parameter/ compartment. More...

C_DECL_SPEC bool rrcCallConv	setConstantNoRegen (RRHandle handle, const char *sid, bool constant)
	Set the constant attribute for an existing species/ parameter/ compartment, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	addReactionFromSBML (RRHandle handle, const char *sbmlRep)
	Add a reaction to the current model. More...

C_DECL_SPEC bool rrcCallConv	addReactionFromSBMLNoRegen (RRHandle handle, const char *sbmlRep)
	Add a reaction to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	addReaction (RRHandle handle, const char rid, const char reactants, int numReactants, const char products, int numProducts, const char kineticLaw)
	Add a reaction to the current model. More...

C_DECL_SPEC bool rrcCallConv	addReactionNoRegen (RRHandle handle, const char rid, const char reactants, int numReactants, const char products, int numProducts, const char kineticLaw)
	Add a reaction to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	removeReaction (RRHandle handle, const char *rid)
	Remove a reaction from the current model. More...

C_DECL_SPEC bool rrcCallConv	removeReactionNoRegen (RRHandle handle, const char *rid)
	Remove a reaction from the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	setReversible (RRHandle handle, const char *rid, bool reversible)
	Set the reversible attribut for an existing reaction in the current model. More...

C_DECL_SPEC bool rrcCallConv	setReversibleNoRegen (RRHandle handle, const char *rid, bool reversible)
	Set the reversible attribut for an existing reaction in the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	setKineticLaw (RRHandle handle, const char rid, const char kineticLaw)
	Set the kinetic law for a existing reaction in the current model. More...

C_DECL_SPEC bool rrcCallConv	setKineticLawNoRegen (RRHandle handle, const char rid, const char kineticLaw)
	Set the kinetic law for a existing reaction in the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC char *rrcCallConv	getKineticLaw (RRHandle handle, const char *rid)
	Get the kinetic law for a existing reaction in the current model. More...

C_DECL_SPEC bool rrcCallConv	addParameter (RRHandle handle, const char *pid, double value)
	Add a parameter to the current model. More...

C_DECL_SPEC bool rrcCallConv	addParameterNoRegen (RRHandle handle, const char *pid, double value)
	Add a parameter to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	removeParameter (RRHandle handle, const char *pid)
	Remove a parameter from the current model. More...

C_DECL_SPEC bool rrcCallConv	removeParameterNoRegen (RRHandle handle, const char *pid)
	Remove a parameter from the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	addCompartment (RRHandle handle, const char *cid, double initVolume)
	Add a compartment to the current model. More...

C_DECL_SPEC bool rrcCallConv	addCompartmentNoRegen (RRHandle handle, const char *cid, double initVolume)
	Add a compartment to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	removeCompartment (RRHandle handle, const char *cid)
	Remove a compartment from the current model. More...

C_DECL_SPEC bool rrcCallConv	removeCompartmentNoRegen (RRHandle handle, const char *cid)
	Remove a compartment from the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	addAssignmentRule (RRHandle handle, const char vid, const char formula)
	Add an assignment rule to the current model. More...

C_DECL_SPEC bool rrcCallConv	addAssignmentRuleNoRegen (RRHandle handle, const char vid, const char formula)
	Add an assignment rule to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	addRateRule (RRHandle handle, const char vid, const char formula)
	Add a rate rule to the current model. More...

C_DECL_SPEC bool rrcCallConv	addRateRuleNoRegen (RRHandle handle, const char vid, const char formula)
	Add a rate rule to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	removeRules (RRHandle handle, const char *vid)
	Remove rules related to given variable from the current model. More...

C_DECL_SPEC bool rrcCallConv	removeRulesNoRegen (RRHandle handle, const char *vid)
	Remove rules related to given variable from the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	addEvent (RRHandle handle, const char eid, bool useValuesFromTriggerTime, const char trigger)
	Add an event to the current model. More...

C_DECL_SPEC bool rrcCallConv	addEventNoRegen (RRHandle handle, const char eid, bool useValuesFromTriggerTime, const char trigger)
	Add an event to the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	addTrigger (RRHandle handle, const char eid, const char trigger)
	Add trigger to an existing event in the model If the given event already has a trigger object, the given trigger will replace the old trigger in the model. More...

C_DECL_SPEC bool rrcCallConv	addTriggerNoRegen (RRHandle handle, const char eid, const char trigger)
	Add trigger to an existing event in the model, without regenerating it The last modification must regenerate for the modifications to take effect If the given event already has a trigger object, the given trigger will replace the old trigger in the model. More...

C_DECL_SPEC bool rrcCallConv	setPersistent (RRHandle handle, const char *eid, bool persistent)
	Set the persistent attribute of the trigger of given event. More...

C_DECL_SPEC bool rrcCallConv	setPersistentNoRegen (RRHandle handle, const char *eid, bool persistent)
	Set the persistent attribute of the trigger of given event, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	setTriggerInitialValue (RRHandle handle, const char *eid, bool initValue)
	Set the initial value attribute of the trigger of given event. More...

C_DECL_SPEC bool rrcCallConv	setTriggerInitialValueNoRegen (RRHandle handle, const char *eid, bool initValue)
	Set the initial value attribute of the trigger of given event, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	addPriority (RRHandle handle, const char eid, const char priority)
	Add priority to an existing event in the model If the given event already has a priority object, the given priority will replace the old priority in the model. More...

C_DECL_SPEC bool rrcCallConv	addPriorityNoRegen (RRHandle handle, const char eid, const char priority)
	Add priority to an existing event in the model, without regenerating it The last modification must regenerate for the modifications to take effect If the given event already has a priority object, the given priority will replace the old priority in the model. More...

C_DECL_SPEC bool rrcCallConv	addDelay (RRHandle handle, const char eid, const char delay)
	Add delay to an existing event in the model If the given event already has a delay object, the given delay will replace the old delay in the model. More...

C_DECL_SPEC bool rrcCallConv	addDelayNoRegen (RRHandle handle, const char eid, const char delay)
	Add delay to an existing event in the model, without regenerating it The last modification must regenerate for the modifications to take effect If the given event already has a delay object, the given delay will replace the old delay in the model. More...

C_DECL_SPEC bool rrcCallConv	addEventAssignment (RRHandle handle, const char eid, const char vid, const char *formula)
	Add an event assignment to an existing event in the current model. More...

C_DECL_SPEC bool rrcCallConv	addEventAssignmentNoRegen (RRHandle handle, const char eid, const char vid, const char *formula)
	Add an event assignment to an existing event in the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	removeEventAssignments (RRHandle handle, const char eid, const char vid)
	Remove event assignments for given variable from an existing event. More...

C_DECL_SPEC bool rrcCallConv	removeEventAssignmentsNoRegen (RRHandle handle, const char eid, const char vid)
	Remove event assignments for given variable from an existing event, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	removeEvent (RRHandle handle, const char *eid)
	Remove an event from the current model. More...

C_DECL_SPEC bool rrcCallConv	removeEventsNoRegen (RRHandle handle, const char *eid)
	Remove an event from the current model, without regenerating it The last modification must regenerate for the modifications to take effect. More...

C_DECL_SPEC bool rrcCallConv	validateCurrentSBML (RRHandle handle)
	Validate the current SBML file. More...

Detailed Description

Add or remove species or reactions without modifying SBML files and reloading.

Function Documentation

◆ addAssignmentRule()

C_DECL_SPEC bool rrcCallConv addAssignmentRule	(	RRHandle	handle,
		const char *	vid,
		const char *	formula
	)

Add an assignment rule to the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	vid	ID of variable that rules assigns formula to
[in]	formula	the math formula of assignment rule to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addAssignmentRuleNoRegen()

C_DECL_SPEC bool rrcCallConv addAssignmentRuleNoRegen	(	RRHandle	handle,
		const char *	vid,
		const char *	formula
	)

Add an assignment rule to the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	vid	ID of variable that rules assigns formula to
[in]	formula	the math formula of assignment rule to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addCompartment()

C_DECL_SPEC bool rrcCallConv addCompartment	(	RRHandle	handle,
		const char *	cid,
		double	initVolume
	)

Add a compartment to the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	cid	ID of the compartment to be added
[in]	initVolume	the initial volume of the compartment to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addCompartmentNoRegen()

C_DECL_SPEC bool rrcCallConv addCompartmentNoRegen	(	RRHandle	handle,
		const char *	cid,
		double	initVolume
	)

Add a compartment to the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	cid	ID of the compartment to be added
[in]	initVolume	the initial volume of the compartment to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addDelay()

C_DECL_SPEC bool rrcCallConv addDelay	(	RRHandle	handle,
		const char *	eid,
		const char *	delay
	)

Add delay to an existing event in the model If the given event already has a delay object, the given delay will replace the old delay in the model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event to add delay
[in]	priority	the math formula of event priority

Returns: Returns false if the call fails, otherwise returns a true

◆ addDelayNoRegen()

C_DECL_SPEC bool rrcCallConv addDelayNoRegen	(	RRHandle	handle,
		const char *	eid,
		const char *	delay
	)

Add delay to an existing event in the model, without regenerating it The last modification must regenerate for the modifications to take effect If the given event already has a delay object, the given delay will replace the old delay in the model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event to add delay
[in]	delay	the math formula of event delay

Returns: Returns false if the call fails, otherwise returns a true

◆ addEvent()

C_DECL_SPEC bool rrcCallConv addEvent	(	RRHandle	handle,
		const char *	eid,
		bool	useValuesFromTriggerTime,
		const char *	trigger
	)

Add an event to the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event to be added
[in]	useValuesFromTriggerTime	indicate the moment at which the event�s assignments are to be evaluated
[in]	trigger	the math formula of event trigger

Returns: Returns false if the call fails, otherwise returns a true

◆ addEventAssignment()

C_DECL_SPEC bool rrcCallConv addEventAssignment	(	RRHandle	handle,
		const char *	eid,
		const char *	vid,
		const char *	formula
	)

Add an event assignment to an existing event in the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event to add assignment
[in]	vid	the ID of the variable to assign formula
[in]	fomula	the math formula to assign

Returns: Returns false if the call fails, otherwise returns a true

◆ addEventAssignmentNoRegen()

C_DECL_SPEC bool rrcCallConv addEventAssignmentNoRegen	(	RRHandle	handle,
		const char *	eid,
		const char *	vid,
		const char *	formula
	)

Add an event assignment to an existing event in the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event to add assignment
[in]	vid	the ID of the variable to assign formula
[in]	fomula	the math formula to assign

Returns: Returns false if the call fails, otherwise returns a true

◆ addEventNoRegen()

C_DECL_SPEC bool rrcCallConv addEventNoRegen	(	RRHandle	handle,
		const char *	eid,
		bool	useValuesFromTriggerTime,
		const char *	trigger
	)

Add an event to the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event to be added
[in]	useValuesFromTriggerTime	indicate the moment at which the event�s assignments are to be evaluated
[in]	trigger	the math formula of event trigger

Returns: Returns false if the call fails, otherwise returns a true

◆ addParameter()

C_DECL_SPEC bool rrcCallConv addParameter	(	RRHandle	handle,
		const char *	pid,
		double	value
	)

Add a parameter to the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	pid	ID of the parameter to be added
[in]	value	the value of the parameter to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addParameterNoRegen()

C_DECL_SPEC bool rrcCallConv addParameterNoRegen	(	RRHandle	handle,
		const char *	pid,
		double	value
	)

Add a parameter to the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	pid	ID of the parameter to be added
[in]	value	the value of the parameter to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addPriority()

C_DECL_SPEC bool rrcCallConv addPriority	(	RRHandle	handle,
		const char *	eid,
		const char *	priority
	)

Add priority to an existing event in the model If the given event already has a priority object, the given priority will replace the old priority in the model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event to add priority
[in]	priority	the math formula of event priority

Returns: Returns false if the call fails, otherwise returns a true

◆ addPriorityNoRegen()

C_DECL_SPEC bool rrcCallConv addPriorityNoRegen	(	RRHandle	handle,
		const char *	eid,
		const char *	priority
	)

Add priority to an existing event in the model, without regenerating it The last modification must regenerate for the modifications to take effect If the given event already has a priority object, the given priority will replace the old priority in the model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event to add priority
[in]	priority	the math formula of event priority

Returns: Returns false if the call fails, otherwise returns a true

◆ addRateRule()

C_DECL_SPEC bool rrcCallConv addRateRule	(	RRHandle	handle,
		const char *	vid,
		const char *	formula
	)

Add a rate rule to the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	vid	ID of variable that rules assigns formula to
[in]	formula	the he math formula of rate rule to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addRateRuleNoRegen()

C_DECL_SPEC bool rrcCallConv addRateRuleNoRegen	(	RRHandle	handle,
		const char *	vid,
		const char *	formula
	)

Add a rate rule to the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	vid	ID of variable that rules assigns formula to
[in]	formula	the he math formula of rate rule to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addReaction()

C_DECL_SPEC bool rrcCallConv addReaction	(	RRHandle	handle,
		const char *	rid,
		const char **	reactants,
		int	numReactants,
		const char **	products,
		int	numProducts,
		const char *	kineticLaw
	)

Add a reaction to the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	rid	ID of the reaction to be added
[in]	reactants	List of reactants ID of reaction to be added, double value could be inserted before ID as stoichiometry
[in]	numReactants	Number of reactants of reaction to be added
[in]	products	List of products ID of reaction to be added, double value could be inserted before ID as stoichiometry
[in]	numProducts	Number of products of reaction to be added
[in]	kineticLaw	kinetic formular of reaction to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addReactionFromSBML()

C_DECL_SPEC bool rrcCallConv addReactionFromSBML	(	RRHandle	handle,
		const char *	sbmlRep
	)

Add a reaction to the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sbmlRep	the SBML representation (i.e. a reaction tag) describing the reaction to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addReactionFromSBMLNoRegen()

C_DECL_SPEC bool rrcCallConv addReactionFromSBMLNoRegen	(	RRHandle	handle,
		const char *	sbmlRep
	)

Add a reaction to the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sbmlRep	the SBML representation (i.e. a reaction tag) describing the reaction to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addReactionNoRegen()

C_DECL_SPEC bool rrcCallConv addReactionNoRegen	(	RRHandle	handle,
		const char *	rid,
		const char **	reactants,
		int	numReactants,
		const char **	products,
		int	numProducts,
		const char *	kineticLaw
	)

Add a reaction to the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	rid	ID of the reaction to be added
[in]	reactants	List of reactants ID of reaction to be added
[in]	numReactants	Number of reactants of reaction to be added
[in]	products	List of products ID of reaction to be added
[in]	numProducts	Number of products of reaction to be added
[in]	kineticLaw	kinetic formular of reaction to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addSpecies()

C_DECL_SPEC bool rrcCallConv addSpecies	(	RRHandle	handle,
		const char *	sid,
		const char *	compartment,
		double	initialAmount,
		bool	hasOnlySubstanceUnits,
		bool	boundaryCondition
	)

Add a species to the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species to be added
[in]	compartment	Compartment of the species to be added
[in]	initialAmount	Initial amount of the species to be added
[in]	substanceUnit	Substance unit of the species to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addSpeciesNoRegen()

C_DECL_SPEC bool rrcCallConv addSpeciesNoRegen	(	RRHandle	handle,
		const char *	sid,
		const char *	compartment,
		double	initialAmount,
		bool	hasOnlySubstanceUnits,
		bool	boundaryCondition
	)

Add a species to the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species to be added
[in]	compartment	Compartment of the species to be added
[in]	initialAmount	Initial amount of the species to be added
[in]	substanceUnit	Substance unit of the species to be added

Returns: Returns false if the call fails, otherwise returns a true

◆ addTrigger()

C_DECL_SPEC bool rrcCallConv addTrigger	(	RRHandle	handle,
		const char *	eid,
		const char *	trigger
	)

Add trigger to an existing event in the model If the given event already has a trigger object, the given trigger will replace the old trigger in the model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event to add trigger
[in]	trigger	the math formula of event trigger

Returns: Returns false if the call fails, otherwise returns a true

◆ addTriggerNoRegen()

C_DECL_SPEC bool rrcCallConv addTriggerNoRegen	(	RRHandle	handle,
		const char *	eid,
		const char *	trigger
	)

Add trigger to an existing event in the model, without regenerating it The last modification must regenerate for the modifications to take effect If the given event already has a trigger object, the given trigger will replace the old trigger in the model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event to add trigger
[in]	trigger	the math formula of event trigger

Returns: Returns false if the call fails, otherwise returns a true

◆ getKineticLaw()

C_DECL_SPEC char* rrcCallConv getKineticLaw	(	RRHandle	handle,
		const char *	rid
	)

Get the kinetic law for a existing reaction in the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	rid	ID of reaction to be modified

Returns: Returns the kinetic law.

◆ removeCompartment()

C_DECL_SPEC bool rrcCallConv removeCompartment	(	RRHandle	handle,
		const char *	cid
	)

Remove a compartment from the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	cid	ID of the compartment to be removed

Returns: Returns false if the call fails, otherwise returns a true

◆ removeCompartmentNoRegen()

C_DECL_SPEC bool rrcCallConv removeCompartmentNoRegen	(	RRHandle	handle,
		const char *	cid
	)

Remove a compartment from the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	cid	ID of the compartment to be removed

Returns: Returns false if the call fails, otherwise returns a true

◆ removeEvent()

C_DECL_SPEC bool rrcCallConv removeEvent	(	RRHandle	handle,
		const char *	eid
	)

Remove an event from the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event to be removed

Returns: Returns false if the call fails, otherwise returns a true

◆ removeEventAssignments()

C_DECL_SPEC bool rrcCallConv removeEventAssignments	(	RRHandle	handle,
		const char *	eid,
		const char *	vid
	)

Remove event assignments for given variable from an existing event.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event
[in]	vid	the ID of the variable of the event assignments

Returns: Returns false if the call fails, otherwise returns a true

◆ removeEventAssignmentsNoRegen()

C_DECL_SPEC bool rrcCallConv removeEventAssignmentsNoRegen	(	RRHandle	handle,
		const char *	eid,
		const char *	vid
	)

Remove event assignments for given variable from an existing event, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event
[in]	vid	the ID of the variable of the event assignments

Returns: Returns false if the call fails, otherwise returns a true

◆ removeEventsNoRegen()

C_DECL_SPEC bool rrcCallConv removeEventsNoRegen	(	RRHandle	handle,
		const char *	eid
	)

Remove an event from the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event to be removed

Returns: Returns false if the call fails, otherwise returns a true

◆ removeParameter()

C_DECL_SPEC bool rrcCallConv removeParameter	(	RRHandle	handle,
		const char *	pid
	)

Remove a parameter from the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	pid	ID of the parameter to be removed

Returns: Returns false if the call fails, otherwise returns a true

◆ removeParameterNoRegen()

C_DECL_SPEC bool rrcCallConv removeParameterNoRegen	(	RRHandle	handle,
		const char *	pid
	)

Remove a parameter from the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	pid	ID of the parameter to be removed

Returns: Returns false if the call fails, otherwise returns a true

◆ removeReaction()

C_DECL_SPEC bool rrcCallConv removeReaction	(	RRHandle	handle,
		const char *	rid
	)

Remove a reaction from the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	rid	ID of the reaction to be removed

Returns: Returns false if the call fails, otherwise returns a true

◆ removeReactionNoRegen()

C_DECL_SPEC bool rrcCallConv removeReactionNoRegen	(	RRHandle	handle,
		const char *	rid
	)

Remove a reaction from the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	rid	ID of the reaction to be removed

Returns: Returns false if the call fails, otherwise returns a true

◆ removeRules()

C_DECL_SPEC bool rrcCallConv removeRules	(	RRHandle	handle,
		const char *	vid
	)

Remove rules related to given variable from the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	vid	ID of variable that rules assigns formula to

Returns: Returns false if the call fails, otherwise returns a true

◆ removeRulesNoRegen()

C_DECL_SPEC bool rrcCallConv removeRulesNoRegen	(	RRHandle	handle,
		const char *	vid
	)

Remove rules related to given variable from the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	vid	ID of variable that rules assigns formula to

Returns: Returns false if the call fails, otherwise returns a true

◆ removeSpecies()

C_DECL_SPEC bool rrcCallConv removeSpecies	(	RRHandle	handle,
		const char *	sid
	)

Remove a species from the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species to be removed

Returns: Returns false if the call fails, otherwise returns a true

◆ removeSpeciesNoRegen()

C_DECL_SPEC bool rrcCallConv removeSpeciesNoRegen	(	RRHandle	handle,
		const char *	sid
	)

Remove a species from the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species to be removed

Returns: Returns false if the call fails, otherwise returns a true

◆ setBoundary()

C_DECL_SPEC bool rrcCallConv setBoundary	(	RRHandle	handle,
		const char *	sid,
		bool	boundaryCondition
	)

Set the boundary condition of an existing species.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species
[in]	boundaryCondition	Boundary condition to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setBoundaryNoRegen()

C_DECL_SPEC bool rrcCallConv setBoundaryNoRegen	(	RRHandle	handle,
		const char *	sid,
		bool	boundaryCondition
	)

Set the boundary condition of an existing species, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species
[in]	boundaryCondition	Boundary condition to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setConstant()

C_DECL_SPEC bool rrcCallConv setConstant	(	RRHandle	handle,
		const char *	sid,
		bool	constant
	)

Set the constant attribute for an existing species/ parameter/ compartment.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species/ parameter/ compartment
[in]	constant	The constant attribute to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setConstantNoRegen()

C_DECL_SPEC bool rrcCallConv setConstantNoRegen	(	RRHandle	handle,
		const char *	sid,
		bool	constant
	)

Set the constant attribute for an existing species/ parameter/ compartment, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species/ parameter/ compartment
[in]	constant	The constant attribute to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setHasOnlySubstanceUnits()

C_DECL_SPEC bool rrcCallConv setHasOnlySubstanceUnits	(	RRHandle	handle,
		const char *	sid,
		bool	hasOnlySubstanceUnits
	)

Set the hasOnlySubstanceUnits attribute for an existing species.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species
[in]	hasOnlySubstanceUnits	Value of hasOnlySubstanceUnits attribute to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setHasOnlySubstanceUnitsNoRegen()

C_DECL_SPEC bool rrcCallConv setHasOnlySubstanceUnitsNoRegen	(	RRHandle	handle,
		const char *	sid,
		bool	hasOnlySubstanceUnits
	)

Set the hasOnlySubstanceUnits attribute for an existing species, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species
[in]	hasOnlySubstanceUnits	Value of hasOnlySubstanceUnits attribute to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setInitAmount()

C_DECL_SPEC bool rrcCallConv setInitAmount	(	RRHandle	handle,
		const char *	sid,
		double	initAmount
	)

Set initial amount for an existing species. Initial amount/concentration set before will be unset.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species
[in]	initAmount	Initial amount to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setInitAmountNoRegen()

C_DECL_SPEC bool rrcCallConv setInitAmountNoRegen	(	RRHandle	handle,
		const char *	sid,
		double	initAmount
	)

Set initial amount for an existing species, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species
[in]	initAmount	Initial amount to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setInitConcentration()

C_DECL_SPEC bool rrcCallConv setInitConcentration	(	RRHandle	handle,
		const char *	sid,
		double	initConcentration
	)

Set initial concentration for an existing species. Initial amount/concentration set before will be unset.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species
[in]	initConcentration	Initial concentration to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setInitConcentrationNoRegen()

C_DECL_SPEC bool rrcCallConv setInitConcentrationNoRegen	(	RRHandle	handle,
		const char *	sid,
		double	initConcentration
	)

Set initial concentration for an existing species, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	sid	ID of the species
[in]	initConcentration	Initial concentration to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setKineticLaw()

C_DECL_SPEC bool rrcCallConv setKineticLaw	(	RRHandle	handle,
		const char *	rid,
		const char *	kineticLaw
	)

Set the kinetic law for a existing reaction in the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	rid	ID of reaction to be modified
[in]	kineticLaw	the kinetic formular of reaction

Returns: Returns false if the call fails, otherwise returns a true

◆ setKineticLawNoRegen()

C_DECL_SPEC bool rrcCallConv setKineticLawNoRegen	(	RRHandle	handle,
		const char *	rid,
		const char *	kineticLaw
	)

Set the kinetic law for a existing reaction in the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	rid	ID of reaction to be modified
[in]	kineticLaw	the kinetic formular of reaction

Returns: Returns false if the call fails, otherwise returns a true

◆ setPersistent()

C_DECL_SPEC bool rrcCallConv setPersistent	(	RRHandle	handle,
		const char *	eid,
		bool	persistent
	)

Set the persistent attribute of the trigger of given event.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event of the trigger
[in]	reversible	Reversible attribute to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setPersistentNoRegen()

C_DECL_SPEC bool rrcCallConv setPersistentNoRegen	(	RRHandle	handle,
		const char *	eid,
		bool	persistent
	)

Set the persistent attribute of the trigger of given event, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event of the trigger
[in]	reversible	Reversible attribute to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setReversible()

C_DECL_SPEC bool rrcCallConv setReversible	(	RRHandle	handle,
		const char *	rid,
		bool	reversible
	)

Set the reversible attribut for an existing reaction in the current model.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	rid	the ID of reaction to be modified
[in]	reversible	Reversible attribute to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setReversibleNoRegen()

C_DECL_SPEC bool rrcCallConv setReversibleNoRegen	(	RRHandle	handle,
		const char *	rid,
		bool	reversible
	)

Set the reversible attribut for an existing reaction in the current model, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	rid	ID of reaction to be modified
[in]	reversible	Reversible attribute to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setTriggerInitialValue()

C_DECL_SPEC bool rrcCallConv setTriggerInitialValue	(	RRHandle	handle,
		const char *	eid,
		bool	initValue
	)

Set the initial value attribute of the trigger of given event.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event of the trigger
[in]	initValue	Initial value attribute to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ setTriggerInitialValueNoRegen()

C_DECL_SPEC bool rrcCallConv setTriggerInitialValueNoRegen	(	RRHandle	handle,
		const char *	eid,
		bool	initValue
	)

Set the initial value attribute of the trigger of given event, without regenerating it The last modification must regenerate for the modifications to take effect.

Parameters

[in]	handle	Handle to a RoadRunner instance
[in]	eid	ID of the event of the trigger
[in]	initValue	Initial value attribute to be set

Returns: Returns false if the call fails, otherwise returns a true

◆ validateCurrentSBML()

C_DECL_SPEC bool rrcCallConv validateCurrentSBML ( RRHandle handle )

Validate the current SBML file.

Parameters

[in] handle Handle to a RoadRunner instance

Returns: Returns false if the current SBML file is not valid, otherwise returns a true

Functions

Detailed Description

Function Documentation

◆ addAssignmentRule()

◆ addAssignmentRuleNoRegen()

◆ addCompartment()

◆ addCompartmentNoRegen()

◆ addDelay()

◆ addDelayNoRegen()

◆ addEvent()

◆ addEventAssignment()

◆ addEventAssignmentNoRegen()

◆ addEventNoRegen()

◆ addParameter()

◆ addParameterNoRegen()

◆ addPriority()

◆ addPriorityNoRegen()

◆ addRateRule()

◆ addRateRuleNoRegen()

◆ addReaction()

◆ addReactionFromSBML()

◆ addReactionFromSBMLNoRegen()

◆ addReactionNoRegen()

◆ addSpecies()

◆ addSpeciesNoRegen()

◆ addTrigger()

◆ addTriggerNoRegen()

◆ getKineticLaw()

◆ removeCompartment()

◆ removeCompartmentNoRegen()

◆ removeEvent()

◆ removeEventAssignments()

◆ removeEventAssignmentsNoRegen()

◆ removeEventsNoRegen()

◆ removeParameter()

◆ removeParameterNoRegen()

◆ removeReaction()

◆ removeReactionNoRegen()

◆ removeRules()

◆ removeRulesNoRegen()

◆ removeSpecies()

◆ removeSpeciesNoRegen()

◆ setBoundary()

◆ setBoundaryNoRegen()

◆ setConstant()

◆ setConstantNoRegen()

◆ setHasOnlySubstanceUnits()

◆ setHasOnlySubstanceUnitsNoRegen()

◆ setInitAmount()

◆ setInitAmountNoRegen()

◆ setInitConcentration()

◆ setInitConcentrationNoRegen()

◆ setKineticLaw()

◆ setKineticLawNoRegen()

◆ setPersistent()

◆ setPersistentNoRegen()

◆ setReversible()

◆ setReversibleNoRegen()

◆ setTriggerInitialValue()

◆ setTriggerInitialValueNoRegen()

◆ validateCurrentSBML()