Welcome to artificial_random_signaling_network’s documentation!

Contents:

• Using
  • Using Julia script to generate synthetic signaling networks
  • Adjustable parameters for biological applications
  • Default parameters setup
• Visualization examples
  • Reaction network motifs
  • Artificial random signaling network examples
• Topology analysis
  • Definitions and examples
  • Code availability
  • Using
• Dynamic examples

Introduction

The artificial_random_signaling_network GitHub repo provides a Julia script to generate artificial random signaling networks with adjustable parameters and provides topological analysis by Python scripts. If you would like to use any of the code, please cite the article (https://www.biorxiv.org/content/10.1101/2020.05.08.084848). Thanks.