36 #ifndef __SBNW_LAYOUT_FR_H_ 
   37 #define __SBNW_LAYOUT_FR_H_ 
Real padding
Padding on compartments. 
Definition: fr.h:84
 
int mag
Use magnetism? 
Definition: fr.h:72
 
SAGITTARIUS_REAL Real
Make Real visible to C. Consider letting Real lie in top namespace. 
Definition: SagittariusCommon.h:136
 
_GraphfabExport void gf_layout_setStiffness(fr_options *opt, double k)
Set the stiffness for the FR algorithm. 
Definition: fr.cpp:66
 
struct __fr_options fr_options
Options passed to the Fruchterman-Reingold algorithm. 
 
_GraphfabExport void gf_doLayoutAlgorithm(fr_options opt, gf_layoutInfo *l)
Run the autolayout (Fruchterman-Reingold) algorithm on a given layout structure. 
Definition: fr.cpp:70
 
int enable_comps
Enable compartment-compartment and compartment-node interaction? 
Definition: fr.h:80
 
Definition: SagittariusCommon.cpp:38
 
Canvas for drawing diagram, dimensions. 
 
Options passed to the Fruchterman-Reingold algorithm. 
Definition: fr.h:58
 
_GraphfabExport void gf_doLayoutAlgorithm2(fr_options opt, gf_network *n, gf_canvas *c)
Run the autolayout (Fruchterman-Reingold) algorithm on a a network and optional canvas. 
Definition: fr.cpp:85
 
Real k
Stiffness. 
Definition: fr.h:60
 
Type which holds layout info. 
Definition: layout.h:138
 
int boundary
Constrain network elements to boundary (i.e. the drawing canvas? 
Definition: fr.h:66
 
int autobary
Should the barycenter be set automatically from layout info? 
Definition: fr.h:78
 
A reaction network. 
Definition: layout.h:61
 
_GraphfabExport void gf_getLayoutOptDefaults(fr_options *opt)
Generate default values for the layout options. 
Definition: fr.cpp:54
 
SBML layout interface in C. 
 
Real baryx
Center of gravitational force. 
Definition: fr.h:76
 
int prerandomize
Randomize node positions before doing layout algo (library code DOES NOT call srand for reproducibili...
Definition: fr.h:82
 
Drawing canvas. 
Definition: layout.h:124
 
Real grav
Strength of gravity (must be greater than 5 to have an effect) 
Definition: fr.h:74