libRoadRunner C++ API  1.3
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rr::RoadRunner Member List

This is the complete list of members for rr::RoadRunner, including all inherited members.

clearModel()rr::RoadRunner
createSelection(const std::string &str)rr::RoadRunner
ensureSolversRegistered()rr::RoadRunnerstatic
getCC(const std::string &variableName, const std::string &parameterName)rr::RoadRunner
getCompiler()rr::RoadRunner
getConservedMoietyAnalysis()rr::RoadRunner
getConservedMoietyValues()rr::RoadRunner
getCurrentSBML(int level=0, int version=0)rr::RoadRunner
getDependentFloatingSpeciesIds()rr::RoadRunner
getDiffStepSize() const rr::RoadRunner
getEE(const std::string &reactionName, const std::string &parameterName)rr::RoadRunner
getEE(const std::string &reactionName, const std::string &parameterName, bool computeSteadyState)rr::RoadRunner
getEigenValueIds()rr::RoadRunner
getExtendedVersionInfo()rr::RoadRunnerstatic
getFloatingSpeciesAmounts()rr::RoadRunner
getFloatingSpeciesConcentrations()rr::RoadRunner
getFloatingSpeciesInitialConcentrationIds()rr::RoadRunner
getFullEigenValues()rr::RoadRunner
getFullJacobian()rr::RoadRunner
getFullStoichiometryMatrix()rr::RoadRunner
getIds(int types, std::list< std::string > &ids)rr::RoadRunner
getIndependentFloatingSpeciesIds()rr::RoadRunner
getInfo()rr::RoadRunner
getInstanceCount()rr::RoadRunner
getInstanceID()rr::RoadRunner
getIntegrator()rr::RoadRunner
getIntegratorByName(const std::string &name)rr::RoadRunner
getKMatrix()rr::RoadRunner
getModel()rr::RoadRunner
getModelName()rr::RoadRunner
getNrMatrix()rr::RoadRunner
getOptions()rr::RoadRunner
getParamPromotedSBML(const std::string &sArg)rr::RoadRunnerstatic
getReducedEigenValues()rr::RoadRunner
getReducedJacobian(double h=-1.0)rr::RoadRunner
getReducedStoichiometryMatrix()rr::RoadRunner
getRegisteredIntegratorNames()rr::RoadRunnerstatic
getRegisteredSteadyStateSolverNames()rr::RoadRunnerstatic
getSBML(int level=0, int version=0)rr::RoadRunner
getScaledElasticityMatrix()rr::RoadRunner
getScaledFloatingSpeciesElasticity(const std::string &reactionName, const std::string &speciesName)rr::RoadRunner
getSelectedValues()rr::RoadRunner
getSelections()rr::RoadRunner
getSimulateOptions()rr::RoadRunner
getSimulationData() const rr::RoadRunner
getSteadyStateSelections()rr::RoadRunner
getSteadyStateSelectionStrings() const rr::RoadRunner
getSteadyStateSolver()rr::RoadRunner
getSteadyStateThreshold() const rr::RoadRunner
getSteadyStateValues()rr::RoadRunner
getSteadyStateValuesNamedArray()rr::RoadRunner
getSupportedIdTypes()rr::RoadRunner
getuCC(const std::string &variableName, const std::string &parameterName)rr::RoadRunner
getuEE(const std::string &reactionName, const std::string &parameterName)rr::RoadRunner
getuEE(const std::string &reactionName, const std::string &parameterName, bool computeSteadystate)rr::RoadRunner
getUnscaledElasticityMatrix()rr::RoadRunner
getUnscaledParameterElasticity(const string &reactionName, const string &parameterName)rr::RoadRunner
getUnscaledSpeciesElasticity(int reactionId, int speciesIndex)rr::RoadRunner
getValue(const std::string &sel)rr::RoadRunner
integrate(double t0, double tf, const SimulateOptions *options=0)rr::RoadRunner
load(const std::string &uriOrSBML, const Dictionary *options=0)rr::RoadRunner
makeIntegrator(std::string name)rr::RoadRunner
oneStep(double currentTime, double stepSize, bool reset=true)rr::RoadRunner
reset()rr::RoadRunner
reset(int options)rr::RoadRunner
RoadRunner()rr::RoadRunner
RoadRunner(const std::string &uriOrSBML, const Dictionary *options=0)rr::RoadRunner
RoadRunner(const std::string &compiler, const std::string &tempDir, const std::string &supportCodeDir)rr::RoadRunner
setCompiler(const std::string &compiler)rr::RoadRunner
setConservedMoietyAnalysis(bool value)rr::RoadRunner
setDiffStepSize(double val)rr::RoadRunner
setSteadyStateSelections(const std::vector< std::string > &steadyStateSelections)rr::RoadRunner
setSteadyStateSelections(const std::vector< rr::SelectionRecord > &steadyStateSelections)rr::RoadRunner
setSteadyStateThreshold(double val)rr::RoadRunner
setValue(const std::string &id, double value)rr::RoadRunner
simulate(const Dictionary *options=0)rr::RoadRunner
steadyState(const Dictionary *dict=0)rr::RoadRunner
steadyStateNamedArray(const Dictionary *dict=0)rr::RoadRunner
~RoadRunner()rr::RoadRunnervirtual